View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_low_28 (Length: 387)
Name: NF18107_low_28
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 20 - 377
Target Start/End: Complemental strand, 32082519 - 32082163
Alignment:
| Q |
20 |
ggattaaagatgccaaagttcgttgtaattggacatagaggaaacggtatgaatgtcttacaatctacggatcggagaatgagagccatcaaagaaaact |
119 |
Q |
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| T |
32082519 |
ggattaaagatgccaaagttcgttgtaattggacatagaggaaacggtatgaatgtcttacaatctacggatcggagaatgagagccatcaaagaaaact |
32082420 |
T |
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| Q |
120 |
ccattatgtcttttaatgctgcttcttcttttcctcttgatttcattgaatttgatgttcaggtatatttcaattctttcatctttctttcacaataatt |
219 |
Q |
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| T |
32082419 |
ccattatgtcttttaatgctgcttcttcttttcctcttgatttcattgaatttgatgttcaggtatatttcaattctttcatctttctttcacaataatt |
32082320 |
T |
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| Q |
220 |
tcannnnnnnnnnaaaatataaatcattatccgaaaaatacgaatattattagattagatttagaagcacgaacgtatgtcctttttccagtttcgatcg |
319 |
Q |
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| T |
32082319 |
tca-tttttttaaaaaatataaatcattatccgaaaaatacgaatattattagattagatttagaagcacgaacgtatgtcctttttccagtttcggtcg |
32082221 |
T |
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| Q |
320 |
ccgcgtatctgatctgaaatcaagccgctttttctgggtttcctattttgcccctatg |
377 |
Q |
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| T |
32082220 |
ccgcgtatctgatctgaaatcaagccgctttttctgggtttcctattttgcccctatg |
32082163 |
T |
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