View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18107_low_33 (Length: 361)

Name: NF18107_low_33
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18107_low_33
NF18107_low_33
[»] chr5 (2 HSPs)
chr5 (10-239)||(19284739-19284967)
chr5 (237-347)||(19288142-19288252)
[»] chr7 (2 HSPs)
chr7 (157-294)||(12598923-12599062)
chr7 (151-262)||(18321225-18321339)
[»] chr6 (1 HSPs)
chr6 (145-331)||(21151702-21151889)
[»] chr8 (1 HSPs)
chr8 (157-259)||(27801473-27801574)
[»] chr4 (1 HSPs)
chr4 (152-199)||(12351309-12351356)
[»] scaffold0150 (1 HSPs)
scaffold0150 (151-199)||(13033-13081)
[»] chr3 (1 HSPs)
chr3 (163-258)||(25288191-25288288)
[»] scaffold1559 (1 HSPs)
scaffold1559 (157-197)||(61-101)
[»] scaffold0118 (1 HSPs)
scaffold0118 (146-190)||(12093-12137)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 19284739 - 19284967
Alignment:
Q  10 catcatcattctctcaccatgattctcattataaaaacatctaaattcacaagattaaacaacctcacaattggaataaagataccctaagatgatggga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19284739 catcatcattctctcaccatgattctcattataaaaacatctaaattcacaagattaaacaacctcacaattggaataaagataccctaagatgatggga 19284838  T
Q  110 ttatccccttacctcgaatgctctgaaaaatgcaaatttttgttcaattctccttagctagggtttgtctcattttctctcctcttctctatgattctta 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19284839 ttatccccttacctcgaatgctctgaaaaatgcaaatttttgttcaattctccttagctagggtttgtctcattttctctcctcttctctatgattctta 19284938  T
Q  210 cgtgcaacaatcaaatgtttctggctttct 239  Q
    |||||||||| |||||||||||||||||||    
T  19284939 cgtgcaacaa-caaatgtttctggctttct 19284967  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 237 - 347
Target Start/End: Original strand, 19288142 - 19288252
Alignment:
Q  237 tctattcttctatttatactagggaattaggctattcatctattattatttttctctctacttatcaaaattttaattcttcct-cccccacttatattt 335  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| | |||||||||||||||||||||| |||||||||||||||    
T  19288142 tctattcttctatttatactagggaattgggctattcatctattattatttttcactctgc-tatcaaaattttaattcttcctccccccacttatattt 19288240  T
Q  336 cagaaggtattg 347  Q
    ||||||||||||    
T  19288241 cagaaggtattg 19288252  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 294
Target Start/End: Original strand, 12598923 - 12599062
Alignment:
Q  157 ttctccttagctagggtttgtctcattttctctcctcttctctatgattcttacgtgcaacaatcaa--atgtttctggctttctattcttctatttata 254  Q
    |||||||||||||||||| | ||| | ||||||| |||||||| ||||||| ||||||| |||  |   | ||||||| ||||||||||||  |||||||    
T  12598923 ttctccttagctagggttagcctcctattctctcttcttctctctgattctaacgtgcagcaactactgaggtttctgactttctattcttacatttata 12599022  T
Q  255 ctagggaattaggctattcatctattattatttttctctc 294  Q
    |||| |||||  ||||| ||||||||||||||||||||||    
T  12599023 ctagagaattgcgctatccatctattattatttttctctc 12599062  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 262
Target Start/End: Complemental strand, 18321339 - 18321225
Alignment:
Q  151 gttcaattctccttagctagggtttgtctcattttctctcctcttctctatgattcttacgtgcaacaatca-aatg-tttctggc-tttctattcttct 247  Q
    ||||||| |||||||||||| ||||| ||| ||| ||| ||||||| || ||||||| | |||||||||  | |||| ||| || | |||||||||||||    
T  18321339 gttcaatactccttagctagagtttgcctcctttcctcccctcttcactctgattctcaagtgcaacaacaataatgttttatgacttttctattcttct 18321240  T
Q  248 atttatactagggaa 262  Q
    |||||||||| ||||    
T  18321239 atttatactaaggaa 18321225  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 331
Target Start/End: Complemental strand, 21151889 - 21151702
Alignment:
Q  145 atttttgttcaattctccttagctagggtttgtctcattttctctcctcttctctatgattcttacgt---gcaacaatcaaatgtttctggctttctat 241  Q
    ||||| |||||||| ||||||| ||||||||| ||| | | || | ||||||||| ||||||| ||||   ||||||||  |||||||||  ||||||||    
T  21151889 attttagttcaattatccttagttagggtttgcctc-tctcctattctcttctctctgattctcacgtctagcaacaat--aatgtttcta-ctttctat 21151794  T
Q  242 tcttctatttatactagggaattaggctattcatctattattatttttctctct---acttatcaaaattttaattcttcctcccccacttat 331  Q
    | |||||||||||||||||||| ||||||||| |||||| |||| ||||| |||   || ||||| ||||||| ||| |||||||||||||||    
T  21151793 tattctatttatactagggaataaggctattcttctattgttatatttctttcttccacatatcataattttacttc-tcctcccccacttat 21151702  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 27801574 - 27801473
Alignment:
Q  157 ttctccttagctagggtttgtctcattttctctcctcttctctatgattcttacgtgcaacaatcaaatg-tttctggctttctattcttctatttatac 255  Q
    |||||| ||||||||||||||||| ||| |||||||||||||| || |||| |  || ||||||  |||| |||||| |||||||||| |||||||||||    
T  27801574 ttctccatagctagggtttgtctcctttcctctcctcttctctttggttctcatatgtaacaat--aatgttttctgactttctattcctctatttatac 27801477  T
Q  256 tagg 259  Q
    ||||    
T  27801476 tagg 27801473  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 12351356 - 12351309
Alignment:
Q  152 ttcaattctccttagctagggtttgtctcattttctctcctcttctct 199  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  12351356 ttcaattctccttagttagggtttgcctccttttctctcctcttctct 12351309  T

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Target: scaffold0150 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 13081 - 13033
Alignment:
Q  151 gttcaattctccttagctagggtttgtctcattttctctcctcttctct 199  Q
    ||||||||||||||| |||||||||| ||| |||| |||||||||||||    
T  13081 gttcaattctccttaactagggtttgcctccttttgtctcctcttctct 13033  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 258
Target Start/End: Complemental strand, 25288288 - 25288191
Alignment:
Q  163 ttagctagggtttgtctcattttctctcctcttctctatgattcttacgtgcaacaatca-aatgtttctggcttt-ctattcttctatttatactag 258  Q
    |||| ||| ||||||||| ||| |||||||||||||| | | ||| | |||||||||  | ||||||||||  ||| |||||||||||||||||||||    
T  25288288 ttaggtagagtttgtctcctttcctctcctcttctctctaactctcatgtgcaacaacaataatgtttctgatttttctattcttctatttatactag 25288191  T

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Target: scaffold1559 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1559
Description:

Target: scaffold1559; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 101 - 61
Alignment:
Q  157 ttctccttagctagggtttgtctcattttctctcctcttct 197  Q
    |||||||||||||||||||| ||| ||| ||||||||||||    
T  101 ttctccttagctagggtttgcctcctttcctctcctcttct 61  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 12093 - 12137
Alignment:
Q  146 tttttgttcaattctccttagctagggtttgtctcattttctctc 190  Q
    |||| ||||||||||| |||||||||||||||||| ||| |||||    
T  12093 ttttggttcaattctctttagctagggtttgtctcctttcctctc 12137  T

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