View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18107_low_38 (Length: 347)

Name: NF18107_low_38
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18107_low_38
NF18107_low_38
[»] chr7 (6 HSPs)
chr7 (68-210)||(24445102-24445244)
chr7 (243-347)||(24445286-24445390)
chr7 (82-129)||(3198634-3198681)
chr7 (251-339)||(24446247-24446336)
chr7 (251-321)||(19543513-19543584)
chr7 (253-337)||(40738218-40738303)
[»] chr5 (3 HSPs)
chr5 (243-347)||(33957322-33957427)
chr5 (251-339)||(37966837-37966926)
chr5 (72-128)||(1812811-1812866)
[»] chr2 (3 HSPs)
chr2 (253-339)||(29078042-29078129)
chr2 (258-339)||(3606985-3607067)
chr2 (251-339)||(29076573-29076662)
[»] scaffold0430 (1 HSPs)
scaffold0430 (243-322)||(6198-6279)
[»] chr6 (3 HSPs)
chr6 (251-347)||(17970824-17970920)
chr6 (72-129)||(10298241-10298298)
chr6 (251-347)||(17971785-17971882)
[»] chr1 (4 HSPs)
chr1 (251-339)||(6242643-6242732)
chr1 (72-129)||(18897253-18897310)
chr1 (83-135)||(17387405-17387457)
chr1 (246-278)||(40533943-40533975)
[»] chr4 (1 HSPs)
chr4 (296-347)||(36219475-36219526)


Alignment Details
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 68 - 210
Target Start/End: Original strand, 24445102 - 24445244
Alignment:
Q  68 atttatattttagaaaacaattgtagattctcaatggtggtcgatatagcctagttttattatggctgannnnnnnagatacgtctgatatacctatata 167  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||       ||||| || |||||||||||||||    
T  24445102 atttatattttagaaaacaattgtagattctcaatggtggttgatatagcctagttttattatggctgatttttttagataggtttgatatacctatata 24445201  T
Q  168 tcattttaattaactttgttagatttgggttgacccctctaac 210  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  24445202 tcattttaattagctttgttagatttgggttgacccctctaac 24445244  T

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Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 243 - 347
Target Start/End: Original strand, 24445286 - 24445390
Alignment:
Q  243 ttcgtctattaactatttaattagtatcgctttgattcataattaaattttgttccgttttagcattttaagtttatcttcattacacattttggtcttt 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24445286 ttcgtctattaactatttaattagtatcgctttgattcataattaaattttgttccgttttagcattttaagtttatcttcattacacattttggtcttt 24445385  T
Q  343 tccgt 347  Q
    |||||    
T  24445386 tccgt 24445390  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 3198681 - 3198634
Alignment:
Q  82 aaacaattgtagattctcaatggtggtcgatatagcctagttttatta 129  Q
    |||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  3198681 aaacaattgttgattctcaatggtggtctatatatcctagttttatta 3198634  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 339
Target Start/End: Complemental strand, 24446336 - 24446247
Alignment:
Q  251 ttaactatttaattagtatcgctttgat-tcataattaaattttgttccgttttagcattttaagtttatcttcattacacattttggtc 339  Q
    ||||||||||||||| ||||||||||||  || ||||||| ||||||  ||||| | |||||||||||||||   ||| |||||||||||    
T  24446336 ttaactatttaattactatcgctttgatcccacaattaaaatttgttatgttttggtattttaagtttatctatgttatacattttggtc 24446247  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 321
Target Start/End: Original strand, 19543513 - 19543584
Alignment:
Q  251 ttaactatttaattagtatcgctttgat-tcataattaaattttgttccgttttagcattttaagtttatct 321  Q
    ||||||||||| ||||||||||||||||  | |||||||| ||| |||||||||   |||||||||||||||    
T  19543513 ttaactatttatttagtatcgctttgatcccttaattaaaatttattccgttttgatattttaagtttatct 19543584  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 337
Target Start/End: Original strand, 40738218 - 40738303
Alignment:
Q  253 aactatttaattagtatcgctttgat-tcataattaaattttgttccgttttagcattttaagtttatcttcattacacattttgg 337  Q
    ||||| |||||||||||||||||| |  | |||||||| ||||||| ||||| | |||||||||| || ||| ||||||| |||||    
T  40738218 aactaattaattagtatcgctttggtcccttaattaaaatttgttctgttttggtattttaagttaattttcgttacacaatttgg 40738303  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 347
Target Start/End: Complemental strand, 33957427 - 33957322
Alignment:
Q  243 ttcgtctattaactatttaattagtatcgctttgattc-ataattaaattttgttccgttttagcattttaagtttatcttcattacacattttggtctt 341  Q
    ||||||| |||||| ||||||||||||| ||||| | | ||||||||| ||| |||||||||   ||||||||||||||| | ||||| ||||||||| |    
T  33957427 ttcgtctcttaactttttaattagtatcactttggtcccataattaaaatttattccgttttgatattttaagtttatctccgttacaaattttggtcat 33957328  T
Q  342 ttccgt 347  Q
    ||||||    
T  33957327 ttccgt 33957322  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 339
Target Start/End: Original strand, 37966837 - 37966926
Alignment:
Q  251 ttaactatttaattagtatcgctttgattc-ataattaaattttgttccgttttagcattttaagtttatcttcattacacattttggtc 339  Q
    |||||||||||||||||||  ||||| | | ||||||||| ||||||||||||| | ||||||| |||||||   ||||| |||||||||    
T  37966837 ttaactatttaattagtattactttggtcccataattaaaatttgttccgttttggtattttaaatttatctcggttacatattttggtc 37966926  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 1812866 - 1812811
Alignment:
Q  72 atattttagaaaacaattgtagattctcaatggtggtcgatatagcctagttttatt 128  Q
    |||||||  |||||||||||||||||||||| |||||| ||||  ||||||||||||    
T  1812866 atattttgtaaaacaattgtagattctcaat-gtggtctatatgtcctagttttatt 1812811  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 339
Target Start/End: Complemental strand, 29078129 - 29078042
Alignment:
Q  253 aactatttaattagtatcgctttgattca-taattaaattttgttccgttttagcattttaagtttatcttcattacacattttggtc 339  Q
    ||||||||||||| ||||| |||| | || |||||||| ||||||||||||| | |||||||||||||||   |||||||||||||||    
T  29078129 aactatttaattaatatcgttttggtccaataattaaaatttgttccgttttggtattttaagtttatctctgttacacattttggtc 29078042  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 3607067 - 3606985
Alignment:
Q  258 tttaattagtatcgctttgatt-cataattaaattttgttccgttttagcattttaagtttatcttcattacacattttggtc 339  Q
    |||||||||||||||||||||| | |||||||| ||| |||||||||   |||||||||| || ||| ||||||| |||||||    
T  3607067 tttaattagtatcgctttgattccttaattaaaatttattccgttttgatattttaagttaattttcgttacacaatttggtc 3606985  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 339
Target Start/End: Original strand, 29076573 - 29076662
Alignment:
Q  251 ttaactatttaattagtatcgctttgattc-ataattaaattttgttccgttttagcattttaagtttatcttcattacacattttggtc 339  Q
    ||||||||||||||||||||  |||| | | |||||| || |||||||||||||   |||||||||| || ||| ||||||| |||||||    
T  29076573 ttaactatttaattagtatcattttggtcccataatttaaatttgttccgttttgatattttaagttaattttctttacacaatttggtc 29076662  T

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Target: scaffold0430 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 6279 - 6198
Alignment:
Q  243 ttcgtctattaactatttaattagtatcgctttgat-tcataattaaattttgttccgtt-ttagcattttaagtttatctt 322  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||| |||||||| || || | ||||| ||||||||||    
T  6279 ttcgtctcttaactatttaattagtatcgctttgatcccataattaaaatttgttccattcttggtattttcagtttatctt 6198  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 347
Target Start/End: Original strand, 17970824 - 17970920
Alignment:
Q  251 ttaactatttaattagtatcgctttgattcataattaaattttgttccgttttagcattttaagtttatcttcattacacattttggtcttttccgt 347  Q
    |||||||||| ||||||||| ||||| | | |||||||| ||| ||| ||||| | ||||||||||| |||   || ||||||||||||||||||||    
T  17970824 ttaactattttattagtatcactttgttccttaattaaagtttattctgttttggtattttaagtttttctctgtttcacattttggtcttttccgt 17970920  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 10298241 - 10298298
Alignment:
Q  72 atattttagaaaacaattgtagattctcaatggtggtcgatatagcctagttttatta 129  Q
    |||||||  |||||| ||||||||||||||||||| || ||||| |||||||||||||    
T  10298241 atattttgtaaaacacttgtagattctcaatggtgatctatatatcctagttttatta 10298298  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 347
Target Start/End: Complemental strand, 17971882 - 17971785
Alignment:
Q  251 ttaactatttaattagtatcgctttgattcat-aattaaattttgttccgttttagcattttaagtttatcttcattacacattttggtcttttccgt 347  Q
    |||||||||| | ||||||||||||| | | | |||| || |||||||| |||| | ||||||||||||||| | || |||||||||||| |||||||    
T  17971882 ttaactattttagtagtatcgctttggtcccttaattcaaatttgttccattttggtattttaagtttatctccgttgcacattttggtcctttccgt 17971785  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 339
Target Start/End: Complemental strand, 6242732 - 6242643
Alignment:
Q  251 ttaactatttaattagtatcgctttgattcat-aattaaattttgttccgttttagcattttaagtttatcttcattacacattttggtc 339  Q
    ||||||| |||||||||||||||||| | | | ||||||| ||||||||||||| | ||||||| || || ||| ||||||| |||||||    
T  6242732 ttaactaattaattagtatcgctttggtcccttaattaaaatttgttccgttttggtattttaatttaattttcgttacacaatttggtc 6242643  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 18897310 - 18897253
Alignment:
Q  72 atattttagaaaacaattgtagattctcaatggtggtcgatatagcctagttttatta 129  Q
    |||||||  |||||||||||||||||||||||||  || ||||| |||| ||||||||    
T  18897310 atattttgtaaaacaattgtagattctcaatggtaatctatatatcctacttttatta 18897253  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 17387405 - 17387457
Alignment:
Q  83 aacaattgtagattctcaatggtggtcgatatagcctagttttattatggctg 135  Q
    ||||||||| |||||||||||||| || ||||| | ||||||||||| |||||    
T  17387405 aacaattgtggattctcaatggtgatctatatatcatagttttattaaggctg 17387457  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 40533943 - 40533975
Alignment:
Q  246 gtctattaactatttaattagtatcgctttgat 278  Q
    |||| ||||||||||||||||||||||||||||    
T  40533943 gtctcttaactatttaattagtatcgctttgat 40533975  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 347
Target Start/End: Original strand, 36219475 - 36219526
Alignment:
Q  296 tccgttttagcattttaagtttatcttcattacacattttggtcttttccgt 347  Q
    |||||||||| ||||||||||||||| | ||||| ||||||||| |||||||    
T  36219475 tccgttttagtattttaagtttatctccgttacatattttggtcatttccgt 36219526  T

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