View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_low_39 (Length: 339)
Name: NF18107_low_39
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 43539942 - 43540266
Alignment:
| Q |
9 |
gagcagcacagatttaggtagggacacttcaaacacataataccttc---------tggnnnnnnntacaaacaaaggtgcccatgaatacgtcattata |
99 |
Q |
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| T |
43539942 |
gagcaacacaaatttaggtagggacacatcaaacacataataccttcaaaacctgttggaaaaaaatacaaacaaaggtgcccatgaatatgtcattata |
43540041 |
T |
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| Q |
100 |
tcaaatggatgttgaccgacaaatatgcattgtatcaaataccagaacttacctcctctactccatctgtgtctgtaatgtctaaatatcctttgataag |
199 |
Q |
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| T |
43540042 |
tcaaatggatgttgactgacaaatatgcatactatcaaataccagaacttacctcctctactccatctgtgtctgtaatgtctaaatatcctttgataag |
43540141 |
T |
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| Q |
200 |
ggagttgaaaactacaggatttggatgcactccaagctccttcattttgtatagaaatctcaaggcttctgtcatgttaccttccttacaataaccgcgt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43540142 |
ggagttgaaaactacaggatttggatgcactccaagctccttcattttgtatagaaatctcaaggcttctgtcatgttaccttccttacaataaccgcgt |
43540241 |
T |
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| Q |
300 |
attatgataccgcaggttcgttcat |
324 |
Q |
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| T |
43540242 |
attatgataccgcaggttcgttcat |
43540266 |
T |
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