View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_low_41 (Length: 333)
Name: NF18107_low_41
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 38277320 - 38276992
Alignment:
| Q |
1 |
ctatttttgttattttatatataccagttgcaaatctttgctcgtaaatttgccggctttcagagacaactagaaagtcaaataatatcgt-gtnnnnnn |
99 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38277320 |
ctatttttgttattttatatataccatttgcaaatctttgctcgtcaatttgccggctttcagagacaactagaaagtcaaataatatcgtagtaaaaaa |
38277221 |
T |
|
| Q |
100 |
nt---cagaaatatgtt-----gcactagagctcggaaccgtggcagcctatagcaggccgtatataataataagcataagattatctgagttttaat-g |
190 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
38277220 |
aaatacagaaatatgttacgttgcactagagctcggaaccgtggcagcctatagcaggccgtatataataataagcataagattctctgagttttaatag |
38277121 |
T |
|
| Q |
191 |
tnnnnnnnnntgtaattccatttctttatattcatataatagacccatgtcatcaatgggaaatagctgctgataa-aaaatggattcaaatgcattaat |
289 |
Q |
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| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38277120 |
taaaaaaaatagtaattccatttctttatattcatatactagacccatgtcatcaatgggaaatagctgctgataaaaaaatggattcaaatgcattaat |
38277021 |
T |
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| Q |
290 |
gtaagctgaagaactaatcaagtgatatt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
38277020 |
gtaagctgaagaactaatcaagtgatatt |
38276992 |
T |
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