View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_low_42 (Length: 331)
Name: NF18107_low_42
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 133 - 315
Target Start/End: Complemental strand, 1078226 - 1078044
Alignment:
| Q |
133 |
ataaaataattcaataagtgtcattgacagtaggtataagtctcacattttgttgtctgaaactactgtagctataggctattgagatgaaatttttcca |
232 |
Q |
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| T |
1078226 |
ataaaataactcaataagtgtcattgaccgtaggtataagtctcacattttgttgtccaaaactactgtagctataggctattgagatgaaatttttcca |
1078127 |
T |
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| Q |
233 |
ttggtatatctaatcaaagttgacggaactaaacgtccattgatatatgtttttcatctagcatctattaccgaaatagtaac |
315 |
Q |
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| T |
1078126 |
ttggtatatctaatcaaagttgacggaactaaacgtccattgatatatgtttttcatctagcatctattaccgaaatagtaac |
1078044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 119 - 284
Target Start/End: Complemental strand, 1095045 - 1094880
Alignment:
| Q |
119 |
gaaaactgctatggataaaataattcaataagtgtcattgacagtaggtataagtctcacattttgttgtctgaaactactgtagctataggctattgag |
218 |
Q |
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| T |
1095045 |
gaaaactgctatgggtaaaacaattaaatacatgtcattgacaatagatgtaagtcttaaattttgttgtctgaaactaccaaagctatatgctattggg |
1094946 |
T |
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| Q |
219 |
atgaaatttttccattggtatatctaatcaaagttgacggaactaaacgtccattgatatatgttt |
284 |
Q |
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| T |
1094945 |
acggaattttgccgttggtatatgtaatcaaagttgacagaactaaacgtccattggtatatgttt |
1094880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 1078536 - 1078467
Alignment:
| Q |
21 |
tactactccctacggtcccaatcataatgaaaaataagaaagaattatttgagtcgaaaaactatttata |
90 |
Q |
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| T |
1078536 |
tactactccctacggtctcaatcataatgaaaaatatgaaagaattatttgagtcgaaaaactatttata |
1078467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 1065658 - 1065596
Alignment:
| Q |
222 |
aaatttttccattggtatatctaatcaaagttgacggaactaaacgtccattgatatatgttt |
284 |
Q |
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| T |
1065658 |
aaatttttccgttggtatatctaatcaaagttgacggagctaaacgtccattggtatatgttt |
1065596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 1065717 - 1065660
Alignment:
| Q |
133 |
ataaaataattcaataagtgtcattgacagtaggtataagtctcacattttgttgtct |
190 |
Q |
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| T |
1065717 |
ataaaacaattcaataggtgtcattgacggttggtataagtctcacattttgttgtct |
1065660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 1051174 - 1051141
Alignment:
| Q |
282 |
tttttcatctagcatctattaccgaaatagtaac |
315 |
Q |
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| T |
1051174 |
tttttcatctagcatctattaacgaaatagtaac |
1051141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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