View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_low_43 (Length: 329)
Name: NF18107_low_43
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 394453 - 394316
Alignment:
| Q |
1 |
catgattgttcatgaagaataatcaaaacccaccaacgtttttgaataaaaatgcattaaacagaaacactccaatataaaaaatttgatttttaaaagt |
100 |
Q |
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| T |
394453 |
catgattgttcatgaagaataatcaaaacccaccaacgtttttgaataaaaatgcattaaacagaaacaccccaatataaaaaatttgatttttaaaagt |
394354 |
T |
|
| Q |
101 |
tttctgaagaacccattattgttttacgaagaataaac |
138 |
Q |
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| T |
394353 |
tttctcaagaacccattattgttttacgaagaataaac |
394316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 394201 - 394142
Alignment:
| Q |
256 |
cgttactttgatcagaggagagaaatggcaatgtggaagaagaatgtggaatgctgtttc |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
394201 |
cgttactttgatcagaggagagaaatggcaatgtggaagaagaatgtggaatgctgtttc |
394142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 2 - 136
Target Start/End: Complemental strand, 19765002 - 19764867
Alignment:
| Q |
2 |
atgattgttcatgaagaataatcaaaacccaccaacgtttttgaataaaaatgcattaaacagaaacactccaatataa-aaaatttgatttttaaaagt |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| |||| |
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| T |
19765002 |
atgattgtttatgaagaataatcaaaacccaccaacgtttttgaataaaaatgcattaaacagaaacaccccaatataaaaaaaattgatttttacaagt |
19764903 |
T |
|
| Q |
101 |
tttctgaagaacccattattgttttacgaagaataa |
136 |
Q |
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||||| |||||||||||||||||||| ||||||||| |
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| T |
19764902 |
tttctcaagaacccattattgttttatgaagaataa |
19764867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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