View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_low_44 (Length: 329)
Name: NF18107_low_44
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_low_44 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 21 - 329
Target Start/End: Complemental strand, 6450448 - 6450140
Alignment:
| Q |
21 |
gagaaggatcacactccaaagtctcaagccaacatgtcttaccatcttattagccgcactctctcttgaacccctt-attgacttgggcgtcagagcacg |
119 |
Q |
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| T |
6450448 |
gagaaggatcacactccaaagtctcaagccaacatgtcttaccatcttattagccacactctctcttgaacccctttattgacttgggcgtcagagcacg |
6450349 |
T |
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| Q |
120 |
tctaggtacaccacccccttccgttggagaatggcttaaggtagctcgtggtggactacaaaagctaaatattatacatcatatcttgacctcgccaaac |
219 |
Q |
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| T |
6450348 |
tctaggtacaccacccccttccattggagaatggcttaaggtagctcgtggtggactacaaaagctaaatattatacatcatatcttgacctagccaaac |
6450249 |
T |
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| Q |
220 |
atcatcttaagtccaactggatcaagnnnnnnnaagtagtaacaaatttgataggtatgtttgtccaatttgatgattaaatgaagcaaaagtcttgcct |
319 |
Q |
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| T |
6450248 |
atcatcttaagtccaactggatcaag-ttttttacgtagtaacaaatttgataggcatgtttgtccaatttgatgattaaatgaagcaaaaatcttgcct |
6450150 |
T |
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| Q |
320 |
tgattttgct |
329 |
Q |
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|||||||||| |
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| T |
6450149 |
tgattttgct |
6450140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 6451260 - 6451184
Alignment:
| Q |
59 |
ttaccatcttattagccgcactctctcttgaaccccttattgacttgggcgtcagagcacgtctaggtacaccaccc |
135 |
Q |
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| T |
6451260 |
ttaccatcttattatccacactctctattgaaccccatactaactagggcgtcaaagcacgtgcaagtacaccaccc |
6451184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 23268464 - 23268525
Alignment:
| Q |
77 |
cactctctcttgaaccccttattgacttgggcgtcagagcacgtctaggtacaccaccccct |
138 |
Q |
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| T |
23268464 |
cactctctcttgaaccccttactgacttgggcgtcggagcacgtgcaggtacacaaccccct |
23268525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 12176390 - 12176454
Alignment:
| Q |
75 |
cgcactctctcttgaaccccttattgacttgggcgtcagagcacgtctaggtacaccaccccctt |
139 |
Q |
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| T |
12176390 |
cgcactctctctcgaaccctttattgacttagacatcagagcacgtgcaggtgcaccaccccctt |
12176454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 23041109 - 23041192
Alignment:
| Q |
52 |
acatgtcttaccatcttattagccgcactctctcttgaaccccttattgacttgggcgtcagagcacgtctaggtacaccaccc |
135 |
Q |
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| T |
23041109 |
acatttcttaccttatttttagccacgctccctcttgaacctcttactaacttcggcgttagagcacgtgtaggtacaccaccc |
23041192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 17355436 - 17355385
Alignment:
| Q |
57 |
tcttaccatcttattagccgcactctctcttgaaccccttattgacttgggc |
108 |
Q |
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| T |
17355436 |
tcttaccctatttttagccgcactctctcttaaaccccttattgacttgggc |
17355385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 51239444 - 51239399
Alignment:
| Q |
71 |
tagccgcactctctcttgaaccccttattgacttgggcgtcagagc |
116 |
Q |
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| T |
51239444 |
tagccgcactctctcttgaacccctcacagacttaggcgtcagagc |
51239399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 14964335 - 14964278
Alignment:
| Q |
77 |
cactctctcttgaaccccttattgacttgggcgtcagagcacgtctaggtacaccacc |
134 |
Q |
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| T |
14964335 |
cactctctcttgaactcctcattgatttcggcgtcagagcacatgtaggtacaccacc |
14964278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 20693944 - 20693999
Alignment:
| Q |
77 |
cactctctcttgaaccccttattgacttgggcgtcagagcacgtctaggtacacca |
132 |
Q |
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| T |
20693944 |
cactttctcttgaaccccttactgacttgggtgtcggagcacgtgcaggtacacca |
20693999 |
T |
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