View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_low_45 (Length: 326)
Name: NF18107_low_45
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_low_45 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 7646917 - 7646588
Alignment:
| Q |
1 |
ttacttattattttatgttcaataggcttgatgtgtgacacgcacggttttatgagaaggacacgagtcacatagacatgtactagattgtcctaagcat |
100 |
Q |
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| T |
7646917 |
ttacttattattttatgttcaataggcttgatgtgtgacacgcacggttttatgagaaggacacgagtcacatagacatgtactagattgtcctaagcat |
7646818 |
T |
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| Q |
101 |
gttaacaagtgacccgtggaataggatgttaatatgttgttgtattattacagatcctaattaacctctgttgtttccttggcgatattggaggagtccc |
200 |
Q |
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| T |
7646817 |
gttaacaagcgacccgtggaataggatgtcaataagttgttgtattattacagatcctaattaacctctgttgtttccttagcgatattggaggagtccc |
7646718 |
T |
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| Q |
201 |
agtg----atctgactctagctataagtttgcaacatcttaacatnnnnnnngatgcttcatacaataaagactgttttaacctctccacaagcttcatt |
296 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7646717 |
agtgatctatctgactctagctataagtttgcaacatcttaacatagaaaaagatgcttcatacaataaagactgttttaacctctccacaaacttcatt |
7646618 |
T |
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| Q |
297 |
tccacgttcactctcttcaaacctttgtcg |
326 |
Q |
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| T |
7646617 |
tccacgttcactctcttcaaacctttgtcg |
7646588 |
T |
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