View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18107_low_48 (Length: 304)

Name: NF18107_low_48
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18107_low_48
NF18107_low_48
[»] chr3 (1 HSPs)
chr3 (1-294)||(52860326-52860619)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 52860619 - 52860326
Alignment:
Q  1 tgagaaagagaagaaggtattgatgagttaaggttgttggaatggagactaagtttacgaagctgtgagagattagagagtgatgaagatattgaaccag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52860619 tgagaaagagaagaaggtattgatgagttaaggttgttggaatggagactaagtttacgaagctgtgagagattagagagtgatgaagatattgaaccag 52860520  T
Q  101 tgagttgaagacgaggtaaacgtatagtgtgaactctgttattgttgttgtaacagagaatgccatgccaatcacatggtgctgaaggtgttgatggatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52860519 tgagttgaagacgaggtaaacgtatagtgtgaactctgttattgttgttgtaacagagaatgccatgccaatcacatggtgctgaaggtgttgatggatc 52860420  T
Q  201 ccaagttgttaaggcattgagtgggtcaagaaggtttagtttgaagattgttaaggcttggatttcggaatgagatgagttgatctgtgatgct 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  52860419 ccaagttgttaaggcattgagtgggtcaagaaggtttagtttgaagattgttaaggcttggatttcggaatgagatgagttgatttgtgttgct 52860326  T

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