View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_low_53 (Length: 266)
Name: NF18107_low_53
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_low_53 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 43554326 - 43554579
Alignment:
| Q |
13 |
aatatctgcatagaaagtcaacagtttagaatatatcttacataaactatatagaatttccaatccatcaccttattattagtgattaaggatgagctta |
112 |
Q |
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| T |
43554326 |
aatatctgcatagaaagtcaacagtttaggatatatcttacataaactatatagaatttccaatccatcaccttattattagtgattaaggatgagctta |
43554425 |
T |
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| Q |
113 |
atttcatttttggtccacaaatattaacattgtgcaattttagtcctcaggtatctcaatttctacaatcaaattccgctgtctattaaccatctaattt |
212 |
Q |
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| T |
43554426 |
atttcatttttggtccacaaatattaacattgtgcaattttagtccttaggtatctcaatttctacaatcaaattccgctgtctattaaccatctaattt |
43554525 |
T |
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| Q |
213 |
ttaaccctataggctacgtgagtcttagttgacgttgacctaaccaatttggca |
266 |
Q |
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| T |
43554526 |
ttaaccctataggctacgtgagtcttagttgacgttgacctaaccaatttggca |
43554579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 43550328 - 43550413
Alignment:
| Q |
16 |
atctgcatagaaagtcaacagtttagaatatatcttacataaactatatagaatttccaatccatcaccttattattagtgattaa |
101 |
Q |
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| T |
43550328 |
atctgcatagacaatcaaccgtttaggagataacttacatcagctatataagattttcagtccatcaccttattattagtgattaa |
43550413 |
T |
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