View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18107_low_57 (Length: 254)

Name: NF18107_low_57
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18107_low_57
NF18107_low_57
[»] chr7 (2 HSPs)
chr7 (10-132)||(4018725-4018847)
chr7 (153-241)||(4018602-4018690)
[»] chr3 (2 HSPs)
chr3 (82-133)||(4816688-4816739)
chr3 (86-133)||(54383587-54383634)
[»] chr6 (1 HSPs)
chr6 (84-133)||(5559950-5559999)
[»] chr4 (1 HSPs)
chr4 (82-133)||(9317607-9317658)
[»] chr5 (2 HSPs)
chr5 (80-133)||(33864833-33864886)
chr5 (89-133)||(36474952-36474996)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 4018847 - 4018725
Alignment:
Q  10 acagaaaaatataaaattgaaattaaatttgcaaatttcannnnnnncgaattctaatttcggcccgaaattgccaagcttggtaacagaagcttgtgac 109  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4018847 acagaaaaatataaaattgaaattaaatttgcaaatttcatttttttcgaattctaatttcggcccgaaatttccaagcttggtaacagaagcttgtgac 4018748  T
Q  110 ctaagtaagggcattaagatgtt 132  Q
    |||||||||||||||||||||||    
T  4018747 ctaagtaagggcattaagatgtt 4018725  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 4018690 - 4018602
Alignment:
Q  153 tcggtccaaaattcaacttctctaatgtatgtgaaaaattataaattaaattgtactccattggcttatacatattaattatgtctgtg 241  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  4018690 tcggttcaaaattcaacttctctaatgtatgtgaaaaattataaataaaattgtactccattggcttatacatattaattatgtttgtg 4018602  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 4816688 - 4816739
Alignment:
Q  82 gccaagcttggtaacagaagcttgtgacctaagtaagggcattaagatgttg 133  Q
    ||||||||| |||||  |||||||||||||||||| ||||||||||||||||    
T  4816688 gccaagcttagtaacgcaagcttgtgacctaagtaggggcattaagatgttg 4816739  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 54383587 - 54383634
Alignment:
Q  86 agcttggtaacagaagcttgtgacctaagtaagggcattaagatgttg 133  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||||    
T  54383587 agcttggtaacgcaagcttgtgacctaagtaggggcattaagatgttg 54383634  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 5559999 - 5559950
Alignment:
Q  84 caagcttggtaacagaagcttgtgacctaagtaagggcattaagatgttg 133  Q
    |||||||| ||||  ||| |||||||||||||||||||||||||||||||    
T  5559999 caagcttgataacgcaagtttgtgacctaagtaagggcattaagatgttg 5559950  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 9317658 - 9317607
Alignment:
Q  82 gccaagcttggtaacagaagcttgtgacctaagtaagggcattaagatgttg 133  Q
    |||||||||||||||| ||||||||||| |||||| || ||||||| |||||    
T  9317658 gccaagcttggtaacacaagcttgtgacataagtagggtcattaaggtgttg 9317607  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 33864886 - 33864833
Alignment:
Q  80 ttgccaagcttggtaacagaagcttgtgacctaagtaagggcattaagatgttg 133  Q
    ||||| |||||||||||  ||||||| ||| |||||||| ||||||||||||||    
T  33864886 ttgccgagcttggtaacgtaagcttgagacttaagtaagagcattaagatgttg 33864833  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 36474996 - 36474952
Alignment:
Q  89 ttggtaacagaagcttgtgacctaagtaagggcattaagatgttg 133  Q
    ||||||||| ||||||||||| |||||| | ||||||||||||||    
T  36474996 ttggtaacacaagcttgtgacttaagtaggcgcattaagatgttg 36474952  T

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