View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_low_69 (Length: 235)
Name: NF18107_low_69
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 50108921 - 50109148
Alignment:
| Q |
1 |
actgtcaacaatgatttggttagataagaaagtttcttatgatcacttacatgtttttggatgtaaagcatcctgtaaagagtcaaaattgtgtgtttag |
100 |
Q |
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| T |
50108921 |
actgccaacgatgatttggttatataagaaagtttcttatgatcccttacatgtttttggatgtaaagcatcctgtaaagagtcaaaattgtgtgtttag |
50109020 |
T |
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| Q |
101 |
tggctactacctagatggggctcgttacaagttttattatgttgttatgaagaaacttatcggatgttgtgatgttgatttcatagaagacaagtagttg |
200 |
Q |
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| T |
50109021 |
tggctactacctagatggagctcgttacaagttttattatgttgttatgaagaaacttatcagatgttgtgatgttgatttcatagaagacaagtagttg |
50109120 |
T |
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| Q |
201 |
acagacattgatagaattagtgatgatg |
228 |
Q |
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| T |
50109121 |
acagacattgatagaattagtgatgatg |
50109148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 169
Target Start/End: Complemental strand, 28228738 - 28228603
Alignment:
| Q |
33 |
tttcttatgatcacttacatgtttttggatgtaaagcatcctgtaaagagtcaaaattgtgtgtttagtggctactacctagatggggctcgttacaagt |
132 |
Q |
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| T |
28228738 |
tttcttatgaccacttatgtgttttcggatgcaaaacata-tgtgaagagtcaacattgtatgtttctttgctatgacttagatggagctgattacaggt |
28228640 |
T |
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| Q |
133 |
tttattatgttgttatgaagaaacttatcggatgttg |
169 |
Q |
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| T |
28228639 |
tttatgattgtgatatgaagaaacttatcggatgttg |
28228603 |
T |
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