View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18107_low_7 (Length: 649)

Name: NF18107_low_7
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18107_low_7
NF18107_low_7
[»] chr1 (11 HSPs)
chr1 (19-635)||(4872205-4872803)
chr1 (457-513)||(6326689-6326745)
chr1 (457-514)||(14508749-14508806)
chr1 (458-502)||(12535423-12535467)
chr1 (457-513)||(28239162-28239218)
chr1 (458-513)||(12532934-12532989)
chr1 (457-500)||(28231589-28231632)
chr1 (457-502)||(28326411-28326456)
chr1 (361-413)||(677215-677263)
chr1 (458-524)||(12540654-12540720)
chr1 (457-502)||(47569252-47569297)
[»] chr5 (1 HSPs)
chr5 (457-514)||(1717979-1718036)
[»] chr3 (2 HSPs)
chr3 (583-635)||(47924744-47924796)
chr3 (456-508)||(47924856-47924908)
[»] chr2 (2 HSPs)
chr2 (457-514)||(9066378-9066435)
chr2 (457-498)||(9068561-9068602)


Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 19 - 635
Target Start/End: Original strand, 4872205 - 4872803
Alignment:
Q  19 tggttaatcttcatctcttgtcacgctaaaaacggtcacatctcttcagctttctctcttttccgcaaaatcatcaacgctggtcttcgtcccagttctt 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4872205 tggttaatcctcatctcttgtcacgctaaaaacggtcacatctcttcagctttctctcttttccgcaaaatcatcaacgctggtcatcgtcccagttctt 4872304  T
Q  119 ccaatatgtatgatcttttctgttgtcttttagccccaggccacatttacaaagcaatgctcttacacaattacatcttcctaaagggtggttttcggtt 218  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4872305 ccgatatgtatgatcttttctgttgtcttttagccccaggccacatttacaaagcaatgctcttacacaattacatcttcctaaagggtggttttcggtt 4872404  T
Q  219 gagctgtaaacttatcatcatctagtcggtagcttatgtgagataggtgaaactaaaagagccatccacttgttcagaaagatagagatggatcttaaca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||    
T  4872405 gagctgtaaacttatcatcatctagtcggtagcttatgtgagataggtgaaactaaaagagccatccacttg------------------gatcttaaca 4872486  T
Q  319 gccttcacgaatatgttctacaggtacataatatgcaggctgtgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatgactgct 418  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4872487 gccttcacgaatatgttctacaggtacataatacgcaggctgtgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatgactgct 4872586  T
Q  419 aagaatatcagctttggttctactatatatcgtaatctatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttaggcaa 518  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4872587 aagaatatcagctgtggttctactatatatcgtaatctatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcaccttctttaggcaa 4872686  T
Q  519 tttgggccagagccaccactttacatccttccctgtccaagttttaatgttgcccttgcctctgcttttgttactgatggagagtttaaagatgctaaaa 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4872687 tttgggccagagccaccactttacatccttccctgtccaagttttaatgttgcccttgcctctgcttttgttactgatggagaggttaaagatgctaaaa 4872786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 457 - 513
Target Start/End: Complemental strand, 6326745 - 6326689
Alignment:
Q  457 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 513  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  6326745 atctaatctatggctattgcatcctcggtcaatttgaacaagcaattgccttgttta 6326689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 457 - 514
Target Start/End: Complemental strand, 14508806 - 14508749
Alignment:
Q  457 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 514  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||    
T  14508806 atctaatctatggttattgcatcgtcggtcaatttaaacaagcaattgccttgtttag 14508749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 502
Target Start/End: Complemental strand, 12535467 - 12535423
Alignment:
Q  458 tctaatctatggctattgcatcctcggtcaatttaaacaagcaat 502  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  12535467 tctaatctatggctattgcatcaccggtcaatttaaacaagcaat 12535423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 457 - 513
Target Start/End: Original strand, 28239162 - 28239218
Alignment:
Q  457 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 513  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||| | ||||||||    
T  28239162 atctagtctatggttattgcatcctcggtcaatttaaacaggcaattgacttcttta 28239218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 513
Target Start/End: Complemental strand, 12532989 - 12532934
Alignment:
Q  458 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 513  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||| ||||| ||||    
T  12532989 tctaatctatggctattacatcaacggtcaatttaaacaagcaattgccttgttta 12532934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 457 - 500
Target Start/End: Original strand, 28231589 - 28231632
Alignment:
Q  457 atctaatctatggctattgcatcctcggtcaatttaaacaagca 500  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  28231589 atctaatctatggttattgcatcctcggtcaatttaaagaagca 28231632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 457 - 502
Target Start/End: Original strand, 28326411 - 28326456
Alignment:
Q  457 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 502  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  28326411 atctaatctttggctattgtatcatcggtcaatttaaacaagcaat 28326456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 413
Target Start/End: Original strand, 677215 - 677263
Alignment:
Q  361 tgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatga 413  Q
    |||||||||||||||||||    |||||||||||||||| |||||||||||||    
T  677215 tgcaaagatagacttgtac----atcaagcctatgatttatattctgaaatga 677263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 524
Target Start/End: Original strand, 12540654 - 12540720
Alignment:
Q  458 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttaggcaatttggg 524  Q
    |||| |||||||||||||||||   ||||||||||| |||||||| ||||| |||||  ||||||||    
T  12540654 tctagtctatggctattgcatcactggtcaatttaagcaagcaattgccttgtttagagaatttggg 12540720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 502
Target Start/End: Original strand, 47569252 - 47569297
Alignment:
Q  457 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 502  Q
    |||||| |||||| ||||||||||| |||||||| |||||||||||    
T  47569252 atctaacctatggttattgcatcctgggtcaattcaaacaagcaat 47569297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 457 - 514
Target Start/End: Original strand, 1717979 - 1718036
Alignment:
Q  457 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 514  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||| ||||| |||||    
T  1717979 atctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttag 1718036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 635
Target Start/End: Complemental strand, 47924796 - 47924744
Alignment:
Q  583 cttttgttactgatggagagtttaaagatgctaaaactgtagttgctgtgatg 635  Q
    |||| |||||||| |||||| |||||||||||||||||||||| |||||||||    
T  47924796 ctttagttactgaaggagaggttaaagatgctaaaactgtagtggctgtgatg 47924744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 456 - 508
Target Start/End: Complemental strand, 47924908 - 47924856
Alignment:
Q  456 tatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgcctt 508  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||| || |||||    
T  47924908 tatctaatcaatggctattgcatcatcggtgaatttaaacaagcgattgcctt 47924856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 457 - 514
Target Start/End: Original strand, 9066378 - 9066435
Alignment:
Q  457 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 514  Q
    ||||||||||||| ||||| ||| ||||||||||||||| |||||| ||||| |||||    
T  9066378 atctaatctatggttattgtatcgtcggtcaatttaaaccagcaattgccttgtttag 9066435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 457 - 498
Target Start/End: Original strand, 9068561 - 9068602
Alignment:
Q  457 atctaatctatggctattgcatcctcggtcaatttaaacaag 498  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  9068561 atctaatctatggctattgcatcgttggtcaatttaaacaag 9068602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University