View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_low_72 (Length: 229)
Name: NF18107_low_72
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_low_72 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 39581639 - 39581811
Alignment:
| Q |
22 |
tgtaaatcttctgggccgttcattttgtttgatttctctctaacattggcaataaaacttgcagcttcaaattggtgcacaattttgttatacaatgctt |
121 |
Q |
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| T |
39581639 |
tgtaaatcttctgggccgttgattttgtttgatttctctctaacattggcaataaaacttgcagcttcaaattggtgcacaattttgttatacaatgctt |
39581738 |
T |
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| Q |
122 |
tggcaagttctgtttttcctattccaccgagtccgcatatacccaacatacatatagtgtcgtcattaggctt |
194 |
Q |
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| T |
39581739 |
tggcaagttctgtttttcctattccaccgagtccgcatatacccaacatacatatagtgtcgtcattaggctt |
39581811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 39620315 - 39620172
Alignment:
| Q |
27 |
atcttctgggccgttcattttgtttgatttctctctaacattggcaataaaacttgcagcttcaaattggtgcacaattttgttatacaatgctttggca |
126 |
Q |
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| T |
39620315 |
atcttctaggccattgattttgtttgatttctctctaacgttggcaagaaaacttgcagcttcaaattggtgcacaattttgttatacaatgatttggca |
39620216 |
T |
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| Q |
127 |
agttctgtttttcctattccaccgagtccgcatatacccaacat |
170 |
Q |
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| T |
39620215 |
agttctgttttccctattccaccaagtccatgtatacccaacat |
39620172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 7755053 - 7755099
Alignment:
| Q |
49 |
tttgatttctctctaacattggcaataaaacttgcagcttcaaattg |
95 |
Q |
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| T |
7755053 |
tttgatttttctctaacattagcaagaaaactcgcagcttcaaattg |
7755099 |
T |
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