View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18107_low_73 (Length: 228)

Name: NF18107_low_73
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18107_low_73
NF18107_low_73
[»] chr8 (10 HSPs)
chr8 (50-228)||(43539752-43539930)
chr8 (50-225)||(43539101-43539276)
chr8 (50-225)||(59548-59723)
chr8 (50-223)||(35675612-35675785)
chr8 (52-201)||(60168-60313)
chr8 (96-228)||(35178802-35178934)
chr8 (76-168)||(28524811-28524903)
chr8 (76-224)||(32898423-32898571)
chr8 (50-83)||(35676373-35676406)
chr8 (131-227)||(2552008-2552104)
[»] chr4 (9 HSPs)
chr4 (50-224)||(29980200-29980373)
chr4 (50-223)||(39267720-39267892)
chr4 (50-222)||(29978833-29979007)
chr4 (50-223)||(39268803-39268975)
chr4 (76-165)||(21623095-21623184)
chr4 (76-174)||(21621870-21621968)
chr4 (110-153)||(32244700-32244743)
chr4 (112-168)||(2786274-2786330)
chr4 (76-140)||(24753539-24753603)
[»] chr3 (12 HSPs)
chr3 (97-225)||(26652603-26652731)
chr3 (50-224)||(27823726-27823900)
chr3 (73-168)||(40206912-40207008)
chr3 (50-123)||(30270735-30270808)
chr3 (80-153)||(40205950-40206023)
chr3 (159-224)||(47118112-47118177)
chr3 (87-228)||(48572978-48573119)
chr3 (96-228)||(17700511-17700643)
chr3 (96-224)||(17701917-17702045)
chr3 (180-223)||(20464543-20464586)
chr3 (78-224)||(52318297-52318443)
chr3 (117-153)||(40317838-40317874)
[»] chr7 (13 HSPs)
chr7 (50-223)||(8484158-8484331)
chr7 (50-224)||(8077545-8077722)
chr7 (105-225)||(8075482-8075601)
chr7 (76-223)||(48646047-48646194)
chr7 (76-227)||(35727693-35727843)
chr7 (77-224)||(7258272-7258419)
chr7 (180-219)||(48788754-48788793)
chr7 (76-219)||(44333141-44333282)
chr7 (73-140)||(384934-385001)
chr7 (180-226)||(385693-385739)
chr7 (179-225)||(21062813-21062859)
chr7 (180-224)||(10899155-10899199)
chr7 (111-167)||(24844627-24844683)
[»] chr2 (9 HSPs)
chr2 (96-224)||(32766237-32766365)
chr2 (76-219)||(31091505-31091648)
chr2 (111-224)||(8420010-8420123)
chr2 (110-226)||(12746213-12746329)
chr2 (76-168)||(15441949-15442041)
chr2 (80-168)||(38853808-38853896)
chr2 (189-221)||(5428361-5428393)
chr2 (180-228)||(14705129-14705177)
chr2 (76-224)||(32764935-32765082)
[»] chr5 (11 HSPs)
chr5 (111-228)||(9538062-9538179)
chr5 (180-228)||(24900414-24900462)
chr5 (76-219)||(4592863-4593006)
chr5 (112-219)||(8074453-8074560)
chr5 (76-219)||(19182952-19183095)
chr5 (80-147)||(19271416-19271483)
chr5 (183-225)||(16978988-16979030)
chr5 (149-219)||(28591165-28591235)
chr5 (180-225)||(14891225-14891270)
chr5 (129-222)||(23772809-23772902)
chr5 (80-168)||(26327054-26327142)
[»] chr1 (5 HSPs)
chr1 (80-165)||(50107185-50107270)
chr1 (110-224)||(11060796-11060910)
chr1 (76-225)||(7945532-7945681)
chr1 (111-168)||(1001207-1001264)
chr1 (76-128)||(534517-534569)
[»] chr6 (1 HSPs)
chr6 (111-223)||(12676483-12676595)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 50 - 228
Target Start/End: Original strand, 43539752 - 43539930
Alignment:
Q  50 actttcaatttggtccctatgattgacacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactatt 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43539752 actttcaatttggtccctatgattgacacatcatgagttaacataggtttttaacggtaaggactaaactgataacagatgtgcatattcaaggactatt 43539851  T
Q  150 ttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactcaaaaa 228  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  43539852 ttgtagtttatcctgagtaggggactaaaatgacagcgaggtgcaaagtcagggaccaaagtgtctatttactcaaaaa 43539930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 50 - 225
Target Start/End: Complemental strand, 43539276 - 43539101
Alignment:
Q  50 actttcaatttggtccctatgattgacacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactatt 149  Q
    |||||||||||||||||||| |||||||||||   |||||||| | ||||||||||||||||| |||||||||||||||| | |||||||| ||||||||    
T  43539276 actttcaatttggtccctataattgacacatcggtagttaacagaattttttaacggtaaggattaaactgataacagatatacacattcagggactatt 43539177  T
Q  150 ttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactcaa 225  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||    
T  43539176 ttgtagtttatcctgagtcggggactaaagtgacagcgaggtgcaaagttagggaccaaagtgactatttactcaa 43539101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 50 - 225
Target Start/End: Complemental strand, 59723 - 59548
Alignment:
Q  50 actttcaatttggtccctatgattgacacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactatt 149  Q
    ||||||||||||||||||||||||||||||||||  ||||||||| ||||||||  ||||||||||||||||| |||||| | | |||||| ||||||||    
T  59723 actttcaatttggtccctatgattgacacatcatcggttaacataattttttaattgtaaggactaaactgatgacagatctacccattcagggactatt 59624  T
Q  150 ttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactcaa 225  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||    
T  59623 ttgtagtttatcctgagtcagggactaaagtgacagcgaggtgtaaagtcagggactaaagtgactatttactcaa 59548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 35675785 - 35675612
Alignment:
Q  50 actttcaatttggtccctatgattgacacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactatt 149  Q
    ||||| ||||||||| |||| ||||||||||||| | |||||| |  |||||||||||||||| | |||||||||||||||| || |||||| || ||||    
T  35675785 acttttaatttggtctctataattgacacatcatcaattaacagaaatttttaacggtaaggattgaactgataacagatgtacatattcaaagaatatt 35675686  T
Q  150 ttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactc 223  Q
    |||||||||||||| ||| | |||||||| ||| |||||||||||||||||| ||||||| |||||||| ||||    
T  35675685 ttgtagtttatcctaagttgaggactaaagtgatagcgaggtgcaaagtcaacgaccaaaatgactattaactc 35675612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 52 - 201
Target Start/End: Original strand, 60168 - 60313
Alignment:
Q  52 tttcaatttggtccctatgattgacacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactatttt 151  Q
    |||||||||||||||||||| ||||||||||  |||||||| |  ||||||| ||||| ||||| ||||||||||| | | |||||||| |||||||| |    
T  60168 tttcaatttggtccctatgaatgacacatcagcagttaacagaaatttttaaaggtaaagactagactgataacaggtctacacattcagggactattct 60267  T
Q  152 gtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaa 201  Q
    ||||||||||||||    ||||| ||| ||||| ||||||||||||||||    
T  60268 gtagtttatcctga----gggaccaaagtgacaacgaggtgcaaagtcaa 60313  T

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Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 35178802 - 35178934
Alignment:
Q  96 ttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaa 195  Q
    ||||||||||  | |||||||| ||||||| || ||||| | ||| |||||  |||||| || |||||||||| ||||| || |||||||||| |||||     
T  35178802 ttttttaacgtcagggactaaagtgataacggaagtgcagaatcagggacttatttgtatttaatcctgagtcagggaccaatatgacagcgatgtgcag 35178901  T
Q  196 agtcaaggaccaaagtgactatttactcaaaaa 228  Q
    ||||| |||||||||||||||||| ||| ||||    
T  35178902 agtcagggaccaaagtgactatttgctcgaaaa 35178934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 28524903 - 28524811
Alignment:
Q  76 cacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtc 168  Q
    |||||||| |||||||| | || |||||||  |  ||||||| ||||||| || ||||||||||||||| || |||||| || ||||||||||    
T  28524903 cacatcatcagttaacaaaattatttaacgtcagagactaaaatgataacggaagtgcacattcaaggattactttgtatttaatcctgagtc 28524811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 224
Target Start/End: Original strand, 32898423 - 32898571
Alignment:
Q  76 cacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggact 175  Q
    |||||||| | |||||| | ||||||||||  | |||||||| ||||||| || ||||| | ||| |||||  |||||| || ||||| |||| |||||     
T  32898423 cacatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctaagtcagggacc 32898522  T
Q  176 aaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactca 224  Q
     |  |||||| ||| |||| ||||| |||| ||||||||||||| ||||    
T  32898523 tatgtgacagtgagttgcagagtcagggactaaagtgactatttgctca 32898571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 35676373 - 35676406
Alignment:
Q  50 actttcaatttggtccctatgattgacacatcat 83  Q
    ||||||||||| ||||||||||||||||||||||    
T  35676373 actttcaatttagtccctatgattgacacatcat 35676406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 2552104 - 2552008
Alignment:
Q  131 tgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactcaaaa 227  Q
    |||||||||||||| || |||||| || ||||||||||   ||||   || ||||||| || ||||||||| ||||||| |||  ||||||||||||    
T  2552104 tgcacattcaaggattactttgtatttaatcctgagtcaaagactttgataacagcgacgtacaaagtcaaagaccaaaatgatcatttactcaaaa 2552008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 50 - 224
Target Start/End: Original strand, 29980200 - 29980373
Alignment:
Q  50 actttcaatttggtccctatgattgacacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactatt 149  Q
    |||||||  ||||| ||||| |||||||||| |  || ||||| | |||||||||||||| |||||||||||||||| || | |||||||| ||||||||    
T  29980200 actttcagattggttcctataattgacacataagtaggtaacagaattttttaacggtaaagactaaactgataacaaatatacacattcagggactatt 29980299  T
Q  150 ttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactca 224  Q
    |||||||||||| ||||| |||||||||| ||||||||||||| |||||| |||| |||||||||||||||||||    
T  29980300 ttgtagtttatcttgagttggggactaaagtgacagcgaggtgtaaagtc-aggatcaaagtgactatttactca 29980373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 39267892 - 39267720
Alignment:
Q  50 actttcaatttggtccctatgattgacacatcatgagttaaca-tagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactat 148  Q
    ||||||||||||| |||||| ||||||| ||||| | |||||  ||||| || |||||||||||||||||||||||||||||| |||||||| | ||| |    
T  39267892 actttcaatttggcccctattattgacatatcatcatttaacggtagttatt-aacggtaaggactaaactgataacagatgtacacattcaggcacttt 39267794  T
Q  149 tttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactc 223  Q
     ||||| |||||||| | |||| |||| || |||||||||||||||||||| ||||  ||| |||||||||||||    
T  39267793 attgtattttatcctcaatcggcgactgaagtgacagcgaggtgcaaagtc-aggaataaaatgactatttactc 39267720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 29979007 - 29978833
Alignment:
Q  50 actttcaatttggtccctatgattgacacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactatt 149  Q
    |||||||||||||||||| | ||| ||||||| |||||||||| |  |||||||||||||||| ||||||||||||| ||||  |  ||||  |||||||    
T  29979007 actttcaatttggtccctctaattaacacatcgtgagttaacaaaaatttttaacggtaaggattaaactgataacaaatgtatattttcagagactatt 29978908  T
Q  150 tt-gtagtttatcctgagtcgggg-actaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttact 222  Q
    || ||| || ||| | |||||||| |||||| ||||| ||| ||| ||||||| | |||||| ||||||||||||    
T  29978907 ttggtatttaatcataagtcggggaactaaagtgacaacgaagtgtaaagtcaggaaccaaaatgactatttact 29978833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 39268803 - 39268975
Alignment:
Q  50 actttcaatttggtccctatgattgacacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactatt 149  Q
    |||||||||||||||| || |||||||||||||  |  ||||| |||||| |||||||||  |||||||||||||||||  | ||| |||| | ||| |     
T  39268803 actttcaatttggtccttaggattgacacatcaccatgtaacagagtttt-taacggtaaaaactaaactgataacagagatacacgttcaggaacttta 39268901  T
Q  150 ttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactc 223  Q
    ||||| ||||| | ||||||| ||||||| |||||||||| || ||| ||| | || ||||||| |||||||||    
T  39268902 ttgtattttattcagagtcggagactaaagtgacagcgagatgtaaaatcaggaactaaagtgattatttactc 39268975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 21623095 - 21623184
Alignment:
Q  76 cacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctga 165  Q
    |||||||| |||||||||| || |||||||    |||||||| |||||||||| ||||||||||||||||||||||||| || |||||||    
T  21623095 cacatcattagttaacataattatttaacgtcggggactaaagtgataacagaagtgcacattcaaggactattttgtatttaatcctga 21623184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 21621968 - 21621870
Alignment:
Q  76 cacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggac 174  Q
    |||||||| |||||||||| || ||||||   | |||||||| ||||||| || |||||||||||| |||||||||||| || |||||||||| |||||    
T  21621968 cacatcatcagttaacataattatttaacatcagggactaaagtgataacggaagtgcacattcaatgactattttgtatttaatcctgagtcagggac 21621870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 153
Target Start/End: Original strand, 32244700 - 32244743
Alignment:
Q  110 ggactaaactgataacagatgtgcacattcaaggactattttgt 153  Q
    |||||||| ||||||| ||||||||||||||||||||| |||||    
T  32244700 ggactaaagtgataacggatgtgcacattcaaggactactttgt 32244743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 2786330 - 2786274
Alignment:
Q  112 actaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtc 168  Q
    |||||| ||||||| || ||||||||||||||| || |||||| || ||||||||||    
T  2786330 actaaaatgataacggaagtgcacattcaaggagtaatttgtatttaatcctgagtc 2786274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 24753539 - 24753603
Alignment:
Q  76 cacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattca 140  Q
    |||||||| |||||||| | || |||||||  || ||||||| |||||||||| |||||||||||    
T  24753539 cacatcatcagttaacaaaattatttaacgcgaatgactaaagtgataacagaagtgcacattca 24753603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 97 - 225
Target Start/End: Original strand, 26652603 - 26652731
Alignment:
Q  97 tttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaa 196  Q
    |||||||| |||||||||||||||||||||||  | |||||||| ||||||||||||| |||||||| |||| ||||||||| |||||||||| ||||||    
T  26652603 tttttaacagtaaggactaaactgataacagagatacacattcatggactattttgtattttatcctaagtcagggactaaagtgacagcgagatgcaaa 26652702  T
Q  197 gtcaaggaccaaagtgactatttactcaa 225  Q
    |||| ||||| ||||||||||||||||||    
T  26652703 gtcagggacccaagtgactatttactcaa 26652731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 27823900 - 27823726
Alignment:
Q  50 actttcaatttggtccctatgattgacacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactatt 149  Q
    |||||||||||| ||| ||| ||||||||||||  | |||||| |  |||||||||||||| ||||||| |||||||||  |  |||||||| |||| |     
T  27823900 actttcaatttgatccttataattgacacatcaccatttaacagaagtttttaacggtaagaactaaaccgataacagagatagacattcaaagacttta 27823801  T
Q  150 ttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactca 224  Q
    ||||| |||||||||  |||| || |||||||||||  ||||| ||| |||||||  ||| ||||||||| ||||    
T  27823800 ttgtattttatcctggatcggagattaaaatgacagttaggtgtaaaatcaaggattaaaatgactatttcctca 27823726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 40206912 - 40207008
Alignment:
Q  73 tgacacatcatgagttaacatagttttttaacggtaagg-actaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtc 168  Q
    |||||| |||| |||||||||| |||||||||| ||||| |||||||||||||| ||  ||||||||||||||||| ||| || || ||| ||||||    
T  40206912 tgacacctcatcagttaacataattttttaacgttaagggactaaactgataacggaaatgcacattcaaggactaatttatacttaatcatgagtc 40207008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 30270808 - 30270735
Alignment:
Q  50 actttcaatttggtccctatgattgacacatcatgagttaacatagttttttaacggtaaggactaaactgata 123  Q
    ||||| |||||||||| ||||||||||||||||  |||||||| |  | ||||||||||| || ||||||||||    
T  30270808 acttttaatttggtccttatgattgacacatcaccagttaacagaagtgtttaacggtaaagattaaactgata 30270735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 40206023 - 40205950
Alignment:
Q  80 tcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgt 153  Q
    |||| |||||||||| ||||||||||  || ||||||||||||||| || |||||||||||  ||||| |||||    
T  40206023 tcattagttaacataattttttaacgccaatgactaaactgataacggaagtgcacattcagagactactttgt 40205950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 47118112 - 47118177
Alignment:
Q  159 atcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactca 224  Q
    ||||||||||||||||| | |||||| ||||||||| ||||| |||| |||||||| |||| ||||    
T  47118112 atcctgagtcggggacttatatgacaacgaggtgcagagtcagggactaaagtgaccatttgctca 47118177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 228
Target Start/End: Complemental strand, 48573119 - 48572978
Alignment:
Q  87 ttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagc 186  Q
    |||||| | ||||||||||  |||||||||| ||||||| || ||||| | |||  | ||  |||||| || |||||||||| |||||  |  ||| | |    
T  48573119 ttaacaaatttttttaacgtcaaggactaaagtgataacggaagtgcagagtcagaggcttatttgtatttaatcctgagtcagggacctatgtgataac 48573020  T
Q  187 gaggtgcaaagtcaaggaccaaagtgactatttactcaaaaa 228  Q
    |||||||| ||||| |||||||||||||||||| || |||||    
T  48573019 gaggtgcagagtcagggaccaaagtgactatttgctaaaaaa 48572978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 228
Target Start/End: Complemental strand, 17700643 - 17700511
Alignment:
Q  96 ttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaa 195  Q
    ||||||||||  | |||||||| ||||||| || ||||| | ||| |||||  |||||| || |||||||||| || ||  |  ||||| |||||||||     
T  17700643 ttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcaggaacctatgtgacaacgaggtgcag 17700544  T
Q  196 agtcaaggaccaaagtgactatttactcaaaaa 228  Q
    |||||| ||| ||||||||||||| ||| ||||    
T  17700543 agtcaaagactaaagtgactatttgctctaaaa 17700511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 17701917 - 17702045
Alignment:
Q  96 ttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaa 195  Q
    ||||||||||  | |||||||| ||||||| || ||||| | ||| |||||  |||||| || ||| |||||| |||||  | ||||||||||| ||||     
T  17701917 ttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggacctatatgacagcgagctgcag 17702016  T
Q  196 agtcaaggaccaaagtgactatttactca 224  Q
    | |||  ||| ||||||||||||||||||    
T  17702017 aatcagagactaaagtgactatttactca 17702045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 20464543 - 20464586
Alignment:
Q  180 tgacagcgaggtgcaaagtcaaggaccaaagtgactatttactc 223  Q
    ||||||| ||||||| |||||||||| |||||||||||||||||    
T  20464543 tgacagcaaggtgcagagtcaaggactaaagtgactatttactc 20464586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 224
Target Start/End: Original strand, 52318297 - 52318443
Alignment:
Q  78 catcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaa 177  Q
    |||||| | |||||| | ||||||||||  | |||||||| | ||| |||| ||||| | ||| |||||  |||||| || |||||||||| ||||   |    
T  52318297 catcatcacttaacagatttttttaacgtcagggactaaagtaatatcagaagtgcagagtcagggacttatttgtatttaatcctgagtcagggatcta 52318396  T
Q  178 aatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactca 224  Q
      ||||||||| ||||| |||||  ||||||||||||||||| ||||    
T  52318397 tgtgacagcgaagtgcagagtcagagaccaaagtgactatttgctca 52318443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 40317874 - 40317838
Alignment:
Q  117 actgataacagatgtgcacattcaaggactattttgt 153  Q
    |||||||||||| |||||||||||||||||| |||||    
T  40317874 actgataacagaagtgcacattcaaggactactttgt 40317838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 8484158 - 8484331
Alignment:
Q  50 actttcaatttggtccctatgattgacacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactatt 149  Q
    ||||||||||| ||||||||||||||||||||    ||||||| |   ||||||||||||| ||||||||||||||| || | |||||||| ||||||||    
T  8484158 actttcaatttagtccctatgattgacacatctgcggttaacagaaaattttaacggtaagtactaaactgataacaaatttacacattcatggactatt 8484257  T
Q  150 ttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactc 223  Q
    || ||||||||| | ||||||| |||| | ||||| ||||||||||| |||  |||||||||||||||||||||    
T  8484258 ttatagtttatcttaagtcgggaactagagtgacaacgaggtgcaaaatcagagaccaaagtgactatttactc 8484331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 224
Target Start/End: Original strand, 8077545 - 8077722
Alignment:
Q  50 actttcaatttggtccctatgattgacacatcatgagttaacatagttttttaacggt---aaggactaaactgataacagatgtgcacattcaaggact 146  Q
    ||||| ||||||||| |||||||||||||||||   ||||||||| ||||| ||||||   ||||||||||| |||||||||| | ||||||||   | |    
T  8077545 acttttaatttggtctctatgattgacacatcagtcgttaacataatttttcaacggttataaggactaaacagataacagatctacacattcagaaatt 8077644  T
Q  147 attttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactca 224  Q
    ||||| || ||||||||||||||| ||||||| ||||| ||||||| |||||   |||||||| ||||||||||||||    
T  8077645 attttataatttatcctgagtcggagactaaagtgacaacgaggtgtaaagttggggaccaaaatgactatttactca 8077722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 8075601 - 8075482
Alignment:
Q  105 ggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaagga 204  Q
    ||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| | |||||| ||||||| | ||| |  |||| |||||||||||    
T  8075601 ggtaaggactaaactgataacagatctacacattcaaggattattttgtagtttatcataagtcggagactaaagtaacaacatggtgtaaagtcaagga 8075502  T
Q  205 ccaaagtgactatttactcaa 225  Q
    || ||||||||||||||||||    
T  8075501 cc-aagtgactatttactcaa 8075482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 223
Target Start/End: Complemental strand, 48646194 - 48646047
Alignment:
Q  76 cacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggact 175  Q
    |||||||| | |||| ||| ||||||||||  |  ||||||| ||||||| || ||| | | ||| |||||  |||||| || |||||||||| |||||     
T  48646194 cacatcatcacttaatatatttttttaacgacagagactaaagtgataacggaagtgtagagtcagggacttatttgtatttaatcctgagtcagggacc 48646095  T
Q  176 aaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactc 223  Q
     |  ||||||||||||||| ||||| ||||||||||||||||||||||    
T  48646094 tatgtgacagcgaggtgcatagtcagggaccaaagtgactatttactc 48646047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 35727843 - 35727693
Alignment:
Q  76 cacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggact 175  Q
    |||||||| | |||||| || ||||||||| | ||||||||| ||||||| |||||||| | |||  ||||  ||| || || |||||||||| |||||     
T  35727843 cacatcatcacttaacagagatttttaacg-tcaggactaaagtgataacggatgtgcagagtcagagacttatttatatttaatcctgagtcagggacc 35727745  T
Q  176 aaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactcaaaa 227  Q
     |  ||||||||||||||| ||||| ||| |||||||||| ||| |||||||    
T  35727744 tatgtgacagcgaggtgcagagtcagggatcaaagtgactgtttgctcaaaa 35727693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 224
Target Start/End: Complemental strand, 7258419 - 7258272
Alignment:
Q  77 acatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggacta 176  Q
    ||||||| | |||||| | ||||||||||  | |||||||| |||||||||| ||||| | |||  ||||  |||||| || |||||||||  |||||      
T  7258419 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacagaagtgcagagtcagagacttatttgtatttaatcctgagttagggacct 7258320  T
Q  177 aaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactca 224  Q
    |  ||||| ||||||| | ||||| |||||||||||||||||| ||||    
T  7258319 atgtgacaacgaggtgtagagtcagggaccaaagtgactatttgctca 7258272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 48788754 - 48788793
Alignment:
Q  180 tgacagcgaggtgcaaagtcaaggaccaaagtgactattt 219  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  48788754 tgacagcgaggtgcaaagtcaaggatcaaagtgactattt 48788793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 44333282 - 44333141
Alignment:
Q  76 cacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggact 175  Q
    |||||||| | |||||| | ||||||||||  ||||||||   ||||||| || ||||| | |||  ||||  |||||| || ||| |||||| |||||     
T  44333282 cacatcatcacttaacagatttttttaacgtcaaggactag--tgataacggaagtgcagagtcagagacttatttgtatttaatcatgagtcagggacc 44333185  T
Q  176 aaaatgacagcgaggtgcaaagtcaaggaccaaagtgactattt 219  Q
     |  ||||||||||||||| ||||| ||||||||||||||||||    
T  44333184 tatgtgacagcgaggtgcagagtcagggaccaaagtgactattt 44333141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 385001 - 384934
Alignment:
Q  73 tgacacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattca 140  Q
    |||||| |||| || ||||||| |||||||||||||  ||||||||||| ||| || |||||||||||    
T  385001 tgacacctcattagctaacataattttttaacggtagagactaaactgagaacggaagtgcacattca 384934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 385693 - 385739
Alignment:
Q  180 tgacagcgaggtgcaaagtcaaggaccaaagtgactatttactcaaa 226  Q
    ||||| |||| |||| ||||||||||||||||||| |||||||||||    
T  385693 tgacaacgagatgcagagtcaaggaccaaagtgaccatttactcaaa 385739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 21062859 - 21062813
Alignment:
Q  179 atgacagcgaggtgcaaagtcaaggaccaaagtgactatttactcaa 225  Q
    |||||||||||||||||||||| |||| |||||||| |||| |||||    
T  21062859 atgacagcgaggtgcaaagtcagggactaaagtgaccattttctcaa 21062813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 10899155 - 10899199
Alignment:
Q  180 tgacagcgaggtgcaaagtcaaggaccaaagtgactatttactca 224  Q
    ||||||||||||||| ||||| |||||||||| || |||||||||    
T  10899155 tgacagcgaggtgcagagtcagggaccaaagtaacaatttactca 10899199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 24844683 - 24844627
Alignment:
Q  111 gactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagt 167  Q
    ||||||||||||||  || |||||||||||| ||||| |||||| || |||||||||    
T  24844683 gactaaactgataatggaagtgcacattcaatgactactttgtatttaatcctgagt 24844627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 32766237 - 32766365
Alignment:
Q  96 ttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaa 195  Q
    ||||||||||  |||||||||| ||||||| || ||||| | ||| |||||  |||||| || |||||||||| |||||  |  ||||| |||||||||     
T  32766237 ttttttaacgtcaaggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacaacgaggtgcag 32766336  T
Q  196 agtcaaggaccaaagtgactatttactca 224  Q
    ||||| |||||||||||||||||| ||||    
T  32766337 agtcagggaccaaagtgactatttgctca 32766365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 31091505 - 31091648
Alignment:
Q  76 cacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggact 175  Q
    |||||||| | |||||||| ||||||||||  |  ||||||| ||||||| || ||||| | ||| |||||  |||||| || |||||||||| |||||     
T  31091505 cacatcatcacttaacatatttttttaacgtcagagactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacc 31091604  T
Q  176 aaaatgacagcgaggtgcaaagtcaaggaccaaagtgactattt 219  Q
     |  ||||||| ||||||| ||||| ||||||||||||||||||    
T  31091605 tatgtgacagcaaggtgcagagtcagggaccaaagtgactattt 31091648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 8420123 - 8420010
Alignment:
Q  111 gactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaag 210  Q
    |||||||||||||||||| ||||||||||| |||||| |||||| || ||| ||| || |||||     |||| ||||  |||| ||||| |||||||||    
T  8420123 gactaaactgataacagaagtgcacattcagggactactttgtatttaatcttgactcagggacatttgtgaccgcgaaatgcagagtcagggaccaaag 8420024  T
Q  211 tgactatttactca 224  Q
    |||| |||||||||    
T  8420023 tgaccatttactca 8420010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 12746213 - 12746329
Alignment:
Q  110 ggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaa 209  Q
    |||||||| ||||||| || | ||||||||| | |||| |||||| || |||||||||| || ||    | ||| |||||||||| ||||||| ||||||    
T  12746213 ggactaaagtgataacggaagggcacattcaggaactactttgtatttaatcctgagtcaggaacctttaagactgcgaggtgcagagtcaagaaccaaa 12746312  T
Q  210 gtgactatttactcaaa 226  Q
    ||||| |||||||||||    
T  12746313 gtgaccatttactcaaa 12746329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 168
Target Start/End: Original strand, 15441949 - 15442041
Alignment:
Q  76 cacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtc 168  Q
    |||||||| |||||||| | || ||||||  ||  ||||||| |||||| | | |||||||||||||||||| |||||| || ||||||||||    
T  15441949 cacatcatcagttaacaaaattatttaacactagagactaaagtgataataaaagtgcacattcaaggactactttgtatttaatcctgagtc 15442041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 38853896 - 38853808
Alignment:
Q  80 tcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtc 168  Q
    ||||||||||||||| || |||||||  |  ||||||| ||||||| || ||||||||| | |||||| |||||| || ||||||||||    
T  38853896 tcatgagttaacataattatttaacgtcagtgactaaattgataacggaagtgcacatttagggactactttgtatttaatcctgagtc 38853808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 5428393 - 5428361
Alignment:
Q  189 ggtgcaaagtcaaggaccaaagtgactatttac 221  Q
    |||||||||||||||||||||||||| ||||||    
T  5428393 ggtgcaaagtcaaggaccaaagtgaccatttac 5428361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 14705129 - 14705177
Alignment:
Q  180 tgacagcgaggtgcaaagtcaaggaccaaagtgactatttactcaaaaa 228  Q
    ||||||||||||||| ||||  |||||||||||||||||| ||| ||||    
T  14705129 tgacagcgaggtgcagagtccgggaccaaagtgactatttgctctaaaa 14705177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 224
Target Start/End: Complemental strand, 32765082 - 32764935
Alignment:
Q  76 cacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggact 175  Q
    |||||||| | |||||||| ||||||||||  | ||| |||| ||||||| || ||||| | ||| |||||  |||||| || |||||||||| | |||     
T  32765082 cacatcatcacttaacata-ttttttaacgtcagggattaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagagacc 32764984  T
Q  176 aaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactca 224  Q
     | |||||| | || |||| | ||| |||| ||||||||||||||||||    
T  32764983 tatatgacaactagctgcagaatcagggactaaagtgactatttactca 32764935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 9538062 - 9538179
Alignment:
Q  111 gactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaag 210  Q
    ||||||| ||||||| || ||||||| |||  ||||  |||||| || |||||||||| |||||  | |||||| |||| |||| ||||| |||||||||    
T  9538062 gactaaaatgataacggaagtgcacaatcagagacttctttgtatttaatcctgagtcagggacctatatgacaacgagatgcagagtcagggaccaaag 9538161  T
Q  211 tgactatttactcaaaaa 228  Q
    ||||||||| ||| ||||    
T  9538162 tgactatttgctctaaaa 9538179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 24900414 - 24900462
Alignment:
Q  180 tgacagcgaggtgcaaagtcaaggaccaaagtgactatttactcaaaaa 228  Q
    ||||||||||||||| ||||| |||||||||||||||||| ||||||||    
T  24900414 tgacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 24900462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 4593006 - 4592863
Alignment:
Q  76 cacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggact 175  Q
    |||||||| | |||||| | ||||||||||  | |||||||| ||||||| || ||||| | ||| |||||  |||||| || ||| |||||| ||||||    
T  4593006 cacatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggact 4592907  T
Q  176 aaaatgacagcgaggtgcaaagtcaaggaccaaagtgactattt 219  Q
     |  |||||||||| | || | ||| |||| |||||||||||||    
T  4592906 tatgtgacagcgagctacataatcagggactaaagtgactattt 4592863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 8074560 - 8074453
Alignment:
Q  112 actaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagt 211  Q
    |||||| ||||||| || ||||| | ||| |||||  |||||| || |||||||||| |||||| |  |||||||||| |||| | ||| |||| |||||    
T  8074560 actaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacttatgtgacagcgagctgcataatcagggactaaagt 8074461  T
Q  212 gactattt 219  Q
    ||||||||    
T  8074460 gactattt 8074453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 19183095 - 19182952
Alignment:
Q  76 cacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggact 175  Q
    |||||||| | |||||||| ||||||||  | |||||||||| ||||||| || ||| | | ||| | |||  |||||| || |||||||||| | |||     
T  19183095 cacatcatcacttaacatatttttttaatcgcaaggactaaagtgataacggaagtgtagagtcaggaacttatttgtatttaatcctgagtcagagacc 19182996  T
Q  176 aaaatgacagcgaggtgcaaagtcaaggaccaaagtgactattt 219  Q
     |  |||||||||||||||||||||||  | ||||| |||||||    
T  19182995 tatgtgacagcgaggtgcaaagtcaagttctaaagtaactattt 19182952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 19271483 - 19271416
Alignment:
Q  80 tcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggacta 147  Q
    |||| ||||||||||  |||||||||  | |||||||||||||||| || ||||||||| ||||||||    
T  19271483 tcattagttaacataaatttttaacgtcatggactaaactgataacggaagtgcacattaaaggacta 19271416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 16979030 - 16978988
Alignment:
Q  183 cagcgaggtgcaaagtcaaggaccaaagtgactatttactcaa 225  Q
    |||| |||||||||||||||||| ||||||||||| |||||||    
T  16979030 cagcaaggtgcaaagtcaaggactaaagtgactatctactcaa 16978988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 28591165 - 28591235
Alignment:
Q  149 tttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactattt 219  Q
    |||||| || |||||||||| |||||  |  ||||||||||||||| ||||| ||| ||||||||||||||    
T  28591165 tttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtcagggatcaaagtgactattt 28591235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 14891225 - 14891270
Alignment:
Q  180 tgacagcgaggtgcaaagtcaaggaccaaagtgactatttactcaa 225  Q
    ||||||||||||||| ||| | |||||||||||||||||| |||||    
T  14891225 tgacagcgaggtgcagagtgagggaccaaagtgactatttgctcaa 14891270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 23772902 - 23772809
Alignment:
Q  129 tgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttact 222  Q
    |||||||||||| | |||| |||||| || ||| || ||| ||||||   |||| |||||||||||||||||  || ||||||||| |||||||    
T  23772902 tgtgcacattcaggaactactttgtatttaatcttgtgtcagggacttttatgatagcgaggtgcaaagtcagagatcaaagtgaccatttact 23772809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 26327054 - 26327142
Alignment:
Q  80 tcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtc 168  Q
    |||| |||||||| |  |||||||||  ||||||||||||||| || || |||||||| |||||  |||||| || || ||||||||||    
T  26327054 tcatcagttaacagaaatttttaacgtcaaggactaaactgattacggaagtgcacatccaagggttattttatatttaatcctgagtc 26327142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 50107185 - 50107270
Alignment:
Q  80 tcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctga 165  Q
    |||| |||||||||| || |||||||  |||||||||| ||||||| || |||||||||||  |||||||||||| || |||||||    
T  50107185 tcatcagttaacataattatttaacgccaaggactaaagtgataacggaagtgcacattcagagactattttgtatttaatcctga 50107270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 11060796 - 11060910
Alignment:
Q  110 ggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaa 209  Q
    |||||||| |||||||  | |||| |||||| ||||||||||||| || ||  ||||||  ||||     ||||||||||||||| ||||||||| ||||    
T  11060796 ggactaaagtgataacgaaagtgcccattcagggactattttgtatttaattttgagtcatggacctttgtgacagcgaggtgcatagtcaaggatcaaa 11060895  T
Q  210 gtgactatttactca 224  Q
    ||||| |||||||||    
T  11060896 gtgaccatttactca 11060910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 7945532 - 7945681
Alignment:
Q  76 cacatcatgagttaacatagttttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggact 175  Q
    |||||||| | ||| |||| ||||||||||  | |||||||| ||||||| || ||||| | |||  ||||  |||||| || |||||||||| || ||     
T  7945532 cacatcatcacttagcatatttttttaacgtcagggactaaagtgataacggaagtgcatagtcagagacttatttgtatttaatcctgagtcaggaacc 7945631  T
Q  176 aaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactcaa 225  Q
     |  ||||||||||||||| ||||| |||||||| ||| ||||| |||||    
T  7945632 tatgtgacagcgaggtgcagagtcagggaccaaaatgattatttgctcaa 7945681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 1001264 - 1001207
Alignment:
Q  111 gactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtc 168  Q
    |||||||||||||||||| |||||||||||  ||||| |||||| || |||| |||||    
T  1001264 gactaaactgataacagaagtgcacattcagagactactttgtatttaatcccgagtc 1001207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 534517 - 534569
Alignment:
Q  76 cacatcatgagttaacatagttttttaacggtaaggactaaactgataacaga 128  Q
    |||||||| | |||||| | ||||||||||||| |||||||| ||||||||||    
T  534517 cacatcataacttaacagatttttttaacggtagggactaaagtgataacaga 534569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 12676483 - 12676595
Alignment:
Q  111 gactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaag 210  Q
    |||||||||||||||| | ||||||||| |  ||||| |||||| || |||||||| | | ||| |   ||||| ||||||||| |||||   | |||||    
T  12676483 gactaaactgataacaaaagtgcacatttagagactactttgtatttaatcctgagacagagaccattgtgacaacgaggtgcagagtcagatatcaaag 12676582  T
Q  211 tgactatttactc 223  Q
    |||||||||||||    
T  12676583 tgactatttactc 12676595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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