View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_low_74 (Length: 226)
Name: NF18107_low_74
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_low_74 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 50108674 - 50108896
Alignment:
| Q |
3 |
atcaggggtggagggtaatgttaacttagggtggccttggcgattctattttatcttaatttatttagnnnnnnnnnnataagttagcgtattattgtgt |
102 |
Q |
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| T |
50108674 |
atcaggggtggagggtaatgttaacttagggtggccttggcgattctattttatcttaatttatttagttttttttg-ataagttagtgtattattgtgt |
50108772 |
T |
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| Q |
103 |
ttagccactctcataatatatataattagctatcccaaaaatttcagtctctactttatcaacaacaaaaatttcaagataatattcgtaaaaatatttt |
202 |
Q |
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| T |
50108773 |
ttagccactctcataatatatataattagctatcccaaaaatttcagtctctactttatcaacaacaaaaatttcaagataatattcgtaaaaatatttt |
50108872 |
T |
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| Q |
203 |
attttatctatatatttagttcct |
226 |
Q |
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| T |
50108873 |
attttatctatatatttagttcct |
50108896 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 42172197 - 42172134
Alignment:
| Q |
155 |
actttatcaacaacaaaaatt-tcaagataatattcgtaaaaatattttattttatctatatattt |
219 |
Q |
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| T |
42172197 |
actttgtcaacaacgaaaattgtcaagataat--tcgtaaaagtattttattttttctatatattt |
42172134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 4430105 - 4430064
Alignment:
| Q |
81 |
ataagttagcgtattattgtgtttagccactctcataatata |
122 |
Q |
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| T |
4430105 |
ataagttagtgtatttttgtgtttagccactctaataatata |
4430064 |
T |
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