View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18108_high_12 (Length: 362)
Name: NF18108_high_12
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 113 - 358
Target Start/End: Complemental strand, 52002003 - 52001758
Alignment:
| Q |
113 |
cattgatgatcatcatcagaggaaggaaataccagaaaatcaaatacctttggcttttgatatcaatgcttataatattaacagcggaactgaaactgat |
212 |
Q |
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| T |
52002003 |
cattgatgatcatcatcagaggaaggaaataccagaaaatcaactacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgat |
52001904 |
T |
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| Q |
213 |
gatagcgacaacgatgatgattttgagatttgtaggaacgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgt |
312 |
Q |
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| T |
52001903 |
gatagcgacaacgatgatgattttgagatttgtaggaacgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgt |
52001804 |
T |
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| Q |
313 |
cacgcattcatagtgtttcagagaataaagaaaaagatgatgatgt |
358 |
Q |
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| T |
52001803 |
cacgcattcatagtgtttcagagaataaagaaaaagatgatgatgt |
52001758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 52002064 - 52002002
Alignment:
| Q |
19 |
ctaaacgcacaaaactctacaactttgaaaacacttccgatccaaaaggaaagaaaccactca |
81 |
Q |
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| T |
52002064 |
ctaaacgcacaaaactctacaactttgaaaacacttctgatccaaaaggaaagaaaccactca |
52002002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 52011878 - 52011785
Alignment:
| Q |
127 |
atcagaggaaggaaataccagaaaatcaaatacctttggcttttgatatcaatgcttataatattaacagcggaactgaaactgatgatagcga |
220 |
Q |
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| T |
52011878 |
atcagaggaaggaaataacagaaaatcaaatatcactggatttggatattaatgactatatcattaccaatgaaactgaaactaatgatagcga |
52011785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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