View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18108_high_13 (Length: 359)
Name: NF18108_high_13
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_high_13 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 359
Target Start/End: Original strand, 45652491 - 45652853
Alignment:
| Q |
15 |
atcatgcatgcatttcaatgattcatagtctctaaacaaatgaccatatccttatcagaacataaactgtctctaaacacagacaccctagtagtagttg |
114 |
Q |
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| T |
45652491 |
atcatgcatgcatttcaatgattcatagtctctaaacaaatgaccatatccttatcagaatataaactgtctctaaacacagacaccctagtagtagttg |
45652590 |
T |
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| Q |
115 |
acaacaaaccataacaaccaatttacttcaacactctcctcccccattgcaatatatctgaagtgggcttctaaagcaataca----------------t |
198 |
Q |
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| T |
45652591 |
acaacaaaccataacaaccaatttacttcaacactctcctcccccattgcaatatatctgaagtgggcctctaaagcaatacattcttgtgaaaatattt |
45652690 |
T |
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| Q |
199 |
tcttgtaccacctacaattat--accctcaccccatatattttgactaaactgtccattttcccctcatatatacaaattaaaatgctcaannnnnnnnn |
296 |
Q |
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| T |
45652691 |
tcttgtaccacctacaattatacaccctcaccccatatattttgactaaactgtccattttgccctcatatatacaaattaaaatgctcaattttttact |
45652790 |
T |
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| Q |
297 |
nnnnctaacacattttnnnnnnnnngttctagtagacacgagataagaagagagagtaagttc |
359 |
Q |
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| T |
45652791 |
ttttctaacacattttcaaaaacaagttctagtagacacgagataagaagagaaagtaagttc |
45652853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 31523915 - 31523947
Alignment:
| Q |
45 |
tctaaacaaatgaccatatccttatcagaacat |
77 |
Q |
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| T |
31523915 |
tctaaacaaatgaccatatccttatcagaacat |
31523947 |
T |
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