View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18108_high_24 (Length: 237)
Name: NF18108_high_24
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 31630934 - 31631108
Alignment:
| Q |
14 |
caaaggtaacaaatcaactcaacccttgttgtagagctggaacatttgagagaataggagttcaacaaaaagtattgttagattatgatattgaagataa |
113 |
Q |
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| T |
31630934 |
caaaagtaacaaatcaactcaacccttgttgtagagctggaacatttgagagaataggagttcaacaaaaagtattgttagattatgatattgaagataa |
31631033 |
T |
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| Q |
114 |
agaggagccataagattgaaacagtgactcaaatatcaaatggatgtgaaataaacattcttgaatggacctatt |
188 |
Q |
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| T |
31631034 |
agaggaaccataagattgaaacagtgactcaaatatcaaatggatgtgaaataagcattcttgaatggacctatt |
31631108 |
T |
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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 31631403 - 31631435
Alignment:
| Q |
188 |
ttgtggaatttgacactgacctccaagttcatt |
220 |
Q |
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| T |
31631403 |
ttgtggaatttgacactgacctccaaattcatt |
31631435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 43758474 - 43758512
Alignment:
| Q |
151 |
aaatggatgtgaaataaacattcttgaatggacctattt |
189 |
Q |
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| T |
43758474 |
aaatggacgtaaaataaacattcttgaatggacctattt |
43758512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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