View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18108_high_26 (Length: 233)
Name: NF18108_high_26
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 38270420 - 38270649
Alignment:
| Q |
1 |
aaaagctttactggattcatttcgcctcgactcagatgaatccaaaaatgaaagcaattttatgggcaaggcatccctaactttacgcgctactaggtga |
100 |
Q |
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| T |
38270420 |
aaaagctttactggattcatttcgcctcgactcagatgaatccaaaaatgaaagcaattttatgggcaaggcatccctaactttacgcgctactaggtga |
38270519 |
T |
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| Q |
101 |
ccgtatggaccatggccatcaaacacaccacagaagatcgcatcttctgacacaaaatcctaaagaaaacaaagatcaaaactaggatgtaaatttcaaa |
200 |
Q |
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| T |
38270520 |
ccgtatggaccatggccatcaaacacaccacagaagatcgcatcttctgacacaaaatcctaaagaaaacaaagatcaaaactaggatgtaaatttcaaa |
38270619 |
T |
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| Q |
201 |
aattaaccaagattccaagtctcacttcat |
230 |
Q |
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| T |
38270620 |
aattaaccaagattccaagtctctcttcat |
38270649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 14960682 - 14960565
Alignment:
| Q |
45 |
aaaatgaaagcaattttatgggcaaggcatccctaactttacgcgctactaggtgaccgtatggaccatggccatcaaacacaccacagaagatcgcatc |
144 |
Q |
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|||||||||||||||||| ||||| | |||||| ||||||||||| || || ||||| | ||||||||| ||||| || |||||||| || |||| ||| |
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| T |
14960682 |
aaaatgaaagcaattttactggcaatgtatccctcactttacgcgcaaccagatgaccttgtggaccatgaccatcgaagacaccacaaaatatcgtatc |
14960583 |
T |
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| Q |
145 |
ttctgacacaaaatccta |
162 |
Q |
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| T |
14960582 |
ttcggacatgaaatccta |
14960565 |
T |
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