View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18108_high_3 (Length: 836)
Name: NF18108_high_3
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 21 - 723
Target Start/End: Original strand, 52610242 - 52610954
Alignment:
| Q |
21 |
ctttgtactctaattttgataattttttgaaggtctgaaattacatagatcagacaccttgatgaatgggagtatgcactcccttatcacaacgtacgaa |
120 |
Q |
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| T |
52610242 |
ctttgtactctaattttgataattttttgaaggtttgagattacatagatcagacaccctgatgactgggaggttccactcccttatcacaacgtacgaa |
52610341 |
T |
|
| Q |
121 |
tttgtgattgatgcccaaaagtggggttcatgatgtacagagctattttcatgaacttcggtttggtcccactctttagtgattttgaggtgacactaat |
220 |
Q |
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| T |
52610342 |
tttgtaattgatccccaaaagtggggttcatgatgtacagacctattttcatgaacttcagtttggtcccactctttagtgattttgaggtgacactaat |
52610441 |
T |
|
| Q |
221 |
gagacactgttttctcactcattcgcaaattcatcatactttgtgggggtttattttgggtttacataagttgtttcgtttctttggtgtgcttgtgtat |
320 |
Q |
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| T |
52610442 |
gagacactgttttctcgctcattcgcaaattcatcctactttgtgggggtttattttgggtttacataagttgtttcgtttcttgggtgtgcttgtgtat |
52610541 |
T |
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| Q |
321 |
gttttattctttagtta---tatctttcaacctttagtggaagagaggcctcacaaatgtgggcctatgttgaccaacctctcttgaaattgtttgaacc |
417 |
Q |
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| T |
52610542 |
gttttattctttagttatactatctttcaacctttagtggaagagaggcctcacaaatgtgggtctatgttgaccaacctctcttgaaattgtttgaacc |
52610641 |
T |
|
| Q |
418 |
gtacatgggctattttaatggcttacgaacaaatatttttgagtcaaagtcgttagcccttcgattaagtgggaggcatgcgatgtccgagattcagtgg |
517 |
Q |
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| T |
52610642 |
gtacatgggctattttaatggcttaggaacaaatatttttgagtcaaagtcgttagcccttcgattaagtgggaggcatgcgatgtccgagattcaatgg |
52610741 |
T |
|
| Q |
518 |
cgtaaggtggaaggaaaattgtctaactcgacgtcaagcctttgtgagatatgtt-----------gttaagttggtcaatggagcattttaagataccc |
606 |
Q |
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| T |
52610742 |
tgtaaggtggaaggaaaattgtctaactcgacgtcaagcctttgtgagatatgttgttaagtttccgttaagttggtcaatggagcattttaaaataccc |
52610841 |
T |
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| Q |
607 |
tcaaggcaattaattaatatttgaaaaggatcggttatgttcaaattgattacaagcacttgcgaatgttaagactaaacaaatctaaaagaaatcacat |
706 |
Q |
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| T |
52610842 |
tcaaagc----aattaatatttgaaaaggattggttatgttcaaattgattacaagcacttgcgaatgttaagactaaacaaatctaaacgaaatcacat |
52610937 |
T |
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| Q |
707 |
tttgtcattcttctaga |
723 |
Q |
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| T |
52610938 |
tttgtcattcttctaga |
52610954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 721 - 825
Target Start/End: Original strand, 52611011 - 52611115
Alignment:
| Q |
721 |
agattagtactagtaaatctaaccatatacgtataataataattcgtccgtgcatctcacatgtaagatctagtttatcatgtttccaaatccaggtctg |
820 |
Q |
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| T |
52611011 |
agattagtactagtaaatctaaccatatacgtataataataattcgtccgtgcatctcacatgtaagatctagtttatcatgtttccaaatccaggtctg |
52611110 |
T |
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| Q |
821 |
atgat |
825 |
Q |
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||||| |
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| T |
52611111 |
atgat |
52611115 |
T |
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