View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18108_high_31 (Length: 209)

Name: NF18108_high_31
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18108_high_31
NF18108_high_31
[»] chr5 (3 HSPs)
chr5 (18-109)||(29783384-29783476)
chr5 (115-190)||(29783262-29783338)
chr5 (141-190)||(41446677-41446726)
[»] chr7 (2 HSPs)
chr7 (129-190)||(7265326-7265387)
chr7 (141-190)||(4059718-4059767)
[»] chr4 (1 HSPs)
chr4 (129-190)||(3649059-3649120)
[»] chr2 (1 HSPs)
chr2 (128-173)||(20964852-20964897)


Alignment Details
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 29783476 - 29783384
Alignment:
Q  18 aagaacgagaatgcacgtcaaactcacttgatttagatagtatataatatctcc-aaacacacgtcaaactacagtgaaaatgagactccttt 109  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  29783476 aagaacgagaatacatgtcaaactcacttgatttagatagtatataatatctccaaaacacacgttaaactacagttaaaatgagactccttt 29783384  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 29783338 - 29783262
Alignment:
Q  115 gcacgcaattgca-ggactaatcatttgagtcttgtgtgacccaaatgagcggcaaactctctctaaatgttttaac 190  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  29783338 gcacgcaattgcaaggactaatcatttgagtcttgtgtgacccaaatgaacggcaaactctttctaaatgttttaac 29783262  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 41446677 - 41446726
Alignment:
Q  141 gagtcttgtgtgacccaaatgagcggcaaactctctctaaatgttttaac 190  Q
    |||||||||| ||||||||||||||| ||||||||| |||  ||||||||    
T  41446677 gagtcttgtgggacccaaatgagcggtaaactctctgtaagagttttaac 41446726  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 7265326 - 7265387
Alignment:
Q  129 gactaatcatttgagtcttgtgtgacccaaatgagcggcaaactctctctaaatgttttaac 190  Q
    ||||||||||| |||| ||||| ||||||||||||| |||||||||| ||||  ||||||||    
T  7265326 gactaatcattcgagtattgtgggacccaaatgagcagcaaactctccctaagagttttaac 7265387  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 4059718 - 4059767
Alignment:
Q  141 gagtcttgtgtgacccaaatgagcggcaaactctctctaaatgttttaac 190  Q
    |||||||||||||||||||| | ||| |||||||||||||  ||||||||    
T  4059718 gagtcttgtgtgacccaaataaacggaaaactctctctaagagttttaac 4059767  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 3649059 - 3649120
Alignment:
Q  129 gactaatcatttgagtcttgtgtgacccaaatgagcggcaaactctctctaaatgttttaac 190  Q
    |||||||| || |||||||||| || |||||||||||| |||||||| ||||  ||||||||    
T  3649059 gactaatccttcgagtcttgtgcgatccaaatgagcggaaaactctccctaagagttttaac 3649120  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 20964897 - 20964852
Alignment:
Q  128 ggactaatcatttgagtcttgtgtgacccaaatgagcggcaaactc 173  Q
    ||||||||||||||||||| ||| ||||||||||||  ||||||||    
T  20964897 ggactaatcatttgagtctcgtgggacccaaatgagacgcaaactc 20964852  T

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