View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18108_high_6 (Length: 582)
Name: NF18108_high_6
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_high_6 |
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| [»] scaffold0793 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 16 - 567
Target Start/End: Complemental strand, 715030 - 714468
Alignment:
| Q |
16 |
atcagggttattgtaattagacgcaaattttgctgcgtgtatgataatctagtgatcatagatggtgtaggaatttggttttttgatatacaagatgtaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
715030 |
atcagggttattgtaattagacgcaaattttgctgcgtgtatgataatctagtgatcatagatggtgtaggaatttggttttttgatatacaagatgtaa |
714931 |
T |
|
| Q |
116 |
atataaaatgatgagtagaatctctttagaaactaagacgtgattttgagtgactaaaattataagttgtaaattgtcact----------tagtctaca |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
714930 |
atataaaatgatgagtagaatctctttagaaactaagacgtgattttgagtgactaaaattataagttgtaaattgtcactcaaaataatatagtctaca |
714831 |
T |
|
| Q |
206 |
gacaactttcatgcattggctagaaactttataggattgtatgagtacttgtctagtacccgtgcgcatacgcacgggtggatatcgttgatgatttaca |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
714830 |
gacaactttcatgcattggctagaaactttataggattgtatgagtactagtctagtacccgtgcgcatacgcacgggtggatatcgttgatgatttaca |
714731 |
T |
|
| Q |
306 |
actcaatacatcaacacatgattagcttcaaattacccaagacaattgatcaaattacataagctaaggacaaaatggtgtcaaagcgatgattgcatta |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
714730 |
actcaatacatcaacacatgattagcttcaaattacccaagacaattgatcaaattacataagctaaggacaaaatggtgtcaaagcgatgattgcatta |
714631 |
T |
|
| Q |
406 |
gtttgacattgaccatttatgtttggaatg-nnnnnnngtcagtatttgattattagttagacattgcttgggtagtcagtcattcagtgaaccctttat |
504 |
Q |
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| T |
714630 |
gtttgacattgaccatttatgtttggaatgttttttttgtcagtatttgattattagttagacattggttgggtagtcagtcattcagtgaaccctttat |
714531 |
T |
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| Q |
505 |
aattgttttattacgacttattattttattcgcttgatggtttatgtgataaaatacattatt |
567 |
Q |
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| T |
714530 |
agttgttttattacgacttattattttattcgcttgatggtttctgtgataaaatacattatt |
714468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 752360 - 752134
Alignment:
| Q |
11 |
acatcatcagggttattgtaattagacgcaaattttgctgcgtgtatgataatctagtgatcatagatggtgtaggaatttggttttttgatatacaaga |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
752360 |
acatgatcagggttattgtaattagacgcaaattttgctgcgtgtatgataatctagtgatcatagatggtgtaggaatttggttttttgatatacaaga |
752261 |
T |
|
| Q |
111 |
tgtaaatataaaatgatgagtagaatctctttagaaactaagacgtgattttgagtgactaaaattataagttgtaaattgtcact----------tagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
752260 |
tgtaaatataaaatgatgagtagaatctctttagaaactaagacgtgattttgagtgactaaaattataagttgtaaattgtcactcaaaataatatagt |
752161 |
T |
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| Q |
201 |
ctacagacaactttcatgcattggcta |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
752160 |
ctacagacaactttcatgcattggcta |
752134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 730953 - 731026
Alignment:
| Q |
11 |
acatcatcagggttattgtaattagacgcaaattttgctgcgtgtatgataatctagtgatcatagatggtgta |
84 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
730953 |
acatgatcagggttattgtaattagacgcaaattttgcatggtgtatgataatctaatgatcatagatggtgta |
731026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: scaffold0793
Description:
Target: scaffold0793; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 380
Target Start/End: Complemental strand, 4306 - 3932
Alignment:
| Q |
16 |
atcagggttattgtaattagacgcaaattttgctgcgtgtatgataatctagtgatcatagatggtgtaggaatttggttttttgatatacaagatgtaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4306 |
atcagggttattgtaattagacgcaaattttgctgcgtgtatgataatctagtgatcatagatggtgtaggaatttggttttttgatatacaagatgtaa |
4207 |
T |
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| Q |
116 |
atataaaatgatgagtagaatctctttagaaactaagacgtgattttgagtgactaaaattataagttgtaaattgtcact----------tagtctaca |
205 |
Q |
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| T |
4206 |
atataaaatgatgagtagaatctctttagaaactaagacgtgattttgagtgactaaaattataagttgtaaattgtcactcaaaataatatagtctaca |
4107 |
T |
|
| Q |
206 |
gacaactttcatgcattggctagaaactttataggattgtatgagtacttgtctagtacccgtgcgcatacgcacgggtggatatcgttgatgatttaca |
305 |
Q |
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||||||||||||||||||||||||||||| | ||||||| ||||| || | || ||||||||||| ||||||||||||||| ||||| |||||||| |
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| T |
4106 |
gacaactttcatgcattggctagaaacttgagaggattggatgaggacgaggagagaacccgtgcgcagacgcacgggtggatagagttgaagatttaca |
4007 |
T |
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| Q |
306 |
actcaatacatcaacacatgattagcttcaaattacccaagacaattgatcaaattacataagctaaggacaaaa |
380 |
Q |
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|| ||| ||| ||||||| ||| |||| ||||| ||||||||||| ||| |||| ||| |||| |||||||||| |
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| T |
4006 |
acgcaagacagcaacacaggatgagctgcaaatgacccaagacaagtgagcaaaggacagaagcgaaggacaaaa |
3932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 2992 - 2932
Alignment:
| Q |
11 |
acatcatcagggttattgtaattagacgcaaattttgctgcgtgtatgataatctagtgat |
71 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2992 |
acatgatcagggttattgtaattagacgcaaattttgcatggtgtatgataatctagtgat |
2932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 256 - 567
Target Start/End: Complemental strand, 3765456 - 3765139
Alignment:
| Q |
256 |
gtctagtacccgtgcgcatacgcacgggtggatatcgttgatgatttacaactcaatacatcaacacatgattagcttcaaattacccaagacaattgat |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
3765456 |
gtctagtacccgtgcgcatacgcacgggtggatatcgttgatgatttacaactcaatacatcaacacatgattagcttcaaactacccaagacaatagaa |
3765357 |
T |
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| Q |
356 |
caaattacataagctaaggacaaaatggtgtcaaagcgatgattgcattagtttgacattgaccatttatgtttggaatg------nnnnnnngtcagta |
449 |
Q |
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| T |
3765356 |
caaattacataagctaaggacaaaatggtgtcaaagcgatgattgcatgagtttgacattgatcatttatttttggaatgtttttttttttttgtcagta |
3765257 |
T |
|
| Q |
450 |
tttgattattagttagacattgcttgggtagtcagtcattcagtgaaccctttataattgttttattacgacttattattttattcgcttgatggtttat |
549 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3765256 |
tttaattattagttagacattggttgggtagtcagtcattcagtgaaccccttatagctgttttattacgacttattattttattcgcttgatggtttat |
3765157 |
T |
|
| Q |
550 |
gtgataaaatacattatt |
567 |
Q |
| |
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|||||||||||||||||| |
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| T |
3765156 |
gtgataaaatacattatt |
3765139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 802050 - 801989
Alignment:
| Q |
261 |
gtacccgtgcgcatacgcacgggtggatatcgttgatgatttacaactcaatacatcaacac |
322 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
802050 |
gtacccgtgcgcatacgcacgggtggatatcgttgatgatttacaactcaatacatcaacac |
801989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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