View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18108_high_8 (Length: 535)
Name: NF18108_high_8
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 426 - 519
Target Start/End: Original strand, 43712124 - 43712217
Alignment:
| Q |
426 |
tccgactctgatgaaatagcagtgactgcgctgccaccaaacaacggcggcactaccaccgactaactccccgtcgccgtaggaacaagaaaaa |
519 |
Q |
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| T |
43712124 |
tccgactctgatgaaatagcagtgactgcgctgccaccaaacaacggcggcactaccaccgactaactccccgccgccgtaggagcaagaaaaa |
43712217 |
T |
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Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 276 - 369
Target Start/End: Original strand, 43711974 - 43712067
Alignment:
| Q |
276 |
ttaaaaatagagataatagatagagggggtcaacgaaaaaggaagaacagagggtcaacgagaagccatggaaataatggtctcgtatccgacg |
369 |
Q |
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| T |
43711974 |
ttaaaaacagagataatagacagagggggtcaacgaaaaaggaagaacagagggtcaacgagaagccatggaattaatggtctcatatccgacg |
43712067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 43711823 - 43711903
Alignment:
| Q |
124 |
ccatcttcaacactaaacccataaaatattatcatcttcatcactaaactaatcaaaattcatcactttaaccaccacacc |
204 |
Q |
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| T |
43711823 |
ccatcttcaacactaaacccataaaatattatcacattcatcactaaactcatcaaaattcatcactttaaccaccacacc |
43711903 |
T |
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Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 426 - 519
Target Start/End: Complemental strand, 26272737 - 26272644
Alignment:
| Q |
426 |
tccgactctgatgaaatagcagtgactgcgctgccaccaaacaacggcggcactaccaccgactaactccccgtcgccgtaggaacaagaaaaa |
519 |
Q |
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| T |
26272737 |
tccgactccgatgaaatagcagtgactgcgctgccaccaaacaacggcagcactaccaccaacgaactccccgccgccgtaggaacaagaaaaa |
26272644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 124 - 204
Target Start/End: Complemental strand, 26273040 - 26272960
Alignment:
| Q |
124 |
ccatcttcaacactaaacccataaaatattatcatcttcatcactaaactaatcaaaattcatcactttaaccaccacacc |
204 |
Q |
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| T |
26273040 |
ccatcttcaacactaaacccataaaatattatcaccttcatcactaaactcatcaaaattcatcactttaaccaccacacc |
26272960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 26272885 - 26272794
Alignment:
| Q |
279 |
aaaatagagataatagatagaggggg-tcaacgaaaaaggaagaacagagggtcaacgagaagccatggaaataatggtctcgtatccgacg |
369 |
Q |
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| T |
26272885 |
aaaacagagataatagacagaggggggtcaacgaaaaaggaagaacagagggtcaatgagaagctatggaaataatggtctcgtatccgacg |
26272794 |
T |
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