View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18108_low_1 (Length: 984)
Name: NF18108_low_1
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 741; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 741; E-Value: 0
Query Start/End: Original strand, 10 - 965
Target Start/End: Original strand, 11859671 - 11860635
Alignment:
| Q |
10 |
gtggtggtggtggtgacaactggattccagaagcaatggaaatgcttaagtttatctattacgacaattttcccacttatcagaagttatgctttgcata |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| | |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
11859671 |
gtggtggtcgtggtgacaactggattccgaaagcattagaaacgcttaagtttatctattacgacaaccttcccacttatcagaagttatgcttcgcata |
11859770 |
T |
|
| Q |
110 |
ttgttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagggtttcttgtcaacccagaacaacaatttggt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
11859771 |
ttgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggacggctgaagggtttcttatcaatccagaacaacaatttggt |
11859870 |
T |
|
| Q |
210 |
caagcttgtttcgaagacttcgttcctctggttttccataaagcgaaaaaagaaagtgaccaccatcagtactgcggtgttgtgaggaacaa-------- |
301 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||||||||| ||||| || ||||||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
11859871 |
caagcttgtttcaaagactttgttcctttggttttccatcaagcggaagaagaaagtgactacctccggtactgcggtgttgtgaggaacaatatgaaca |
11859970 |
T |
|
| Q |
302 |
-ctacttatatagaatgaatcggttgatgcataaactcgcaacgcaagaaatcactggtaacgaaaacatcaccatggatgtgatgcgggaaagagttca |
400 |
Q |
| |
|
|| ||| ||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
11859971 |
actgcttgtatagaatgaatccgttgatgcataaactcgcaaggcaagaaatcgctggtaacgaaaacatcaccgtggatgtgatgggggaaagggttca |
11860070 |
T |
|
| Q |
401 |
agatggaatgctacgagtttcattcgattttgctttagatcttacatgtgagatccctgatttggtgtttcagaaagcaaagaaactaaggaccattctt |
500 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11860071 |
agatggaatgctgcgagtttcgttcgattttgctttagatctttcatgtgagatccctgatttggtgtttcagaaagcaaagaaactaaggacctttctt |
11860170 |
T |
|
| Q |
501 |
ttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatcttcgacaccttcaagtgctcgctacgcg |
600 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11860171 |
ttgccatacaacattaacaaccctcggcttccgtacgaggtaaaggtgacaacatcaacttgtgataagatcttcgacaccttcaagtgctcgctacgcg |
11860270 |
T |
|
| Q |
601 |
tgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagtacttgaggtatctagatctttcccataacaacatggagaa |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11860271 |
tgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagtacttgaggtatctagatctttcccataacaacatagagaa |
11860370 |
T |
|
| Q |
701 |
gcttcctagttgcataacaaatcttatccacttgcaaacattgaaactgtctcaatgtcatgtcctcaaggaattgccaaaagacatggatgatttgagt |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11860371 |
gcttcctagttgcataacaaatcttatccacttgcaaacattgaaactgtctcaatgtcatgtcctcaaggaattgccaaaagacatggacgatttgagt |
11860470 |
T |
|
| Q |
801 |
tgcctcaaccatcttgacttagaggggtgcttggatctaactcaaatgccaagtgggataagtaagctcacttccttgcaaacattgtcacttttcgttg |
900 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| | |
|
|
| T |
11860471 |
tgcctcaatcatcttgacttagagggatgcttggatctaactcaaatgccaagtgggataaataagcttacttctttgcaaacattgtcacttttcgtag |
11860570 |
T |
|
| Q |
901 |
ccagcaagaaacaagtcacgggaggactaagatcactcacagatcttaacaaactgagaggccac |
965 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11860571 |
ccagcaagaaacaagtcacgggaggactaagatcactcacagatcttaacaatctgagaggccac |
11860635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 2 - 965
Target Start/End: Original strand, 11827528 - 11828500
Alignment:
| Q |
2 |
gaagcaaagtggtggtggtggtgacaactggattccagaagcaatggaaatgcttaagtttatctattacgacaattttcccacttatcagaagttatgc |
101 |
Q |
| |
|
|||||| ||||||| ||||||||| | ||||||| |||||| | |||| | | ||| |||||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
11827528 |
gaagcatagtggtgttggtggtgaagaatggattcgggaagcactagaaaaggtgaagcttatctattacgacgatcttcccacttatcagaaattatgc |
11827627 |
T |
|
| Q |
102 |
tttgcatattgttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagggtttcttgtcaacccagaacaac |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| |||||||||| |
|
|
| T |
11827628 |
tttgcatattgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggactggtgaagggtttcttatcaatccagaacaac |
11827727 |
T |
|
| Q |
202 |
aatttggtcaagcttgtttcgaagacttcgttcctctggttttccataaagcgaaaaaagaaagtgaccaccatcagtactgcggtgttgtgaggaacaa |
301 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||| ||||||||||| ||||| || |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11827728 |
aatttggtcatgcttgtttcgaagactttgttcctttggttttccatcaagcggaagaagaaagtgaccaccagaagtactgcggtgttgtgaggaacaa |
11827827 |
T |
|
| Q |
302 |
c---------tacttatatagaatgaatcggttgatgcataaactcgcaacgcaagaaatcactggtaacgaaaacatcaccatggatgtgatgcgggaa |
392 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
11827828 |
catgaacaactacttatatagaatgaatcggttaatgcataaactcgcaagacaagaaattgctggtgacgaaaacatcaccgtggatgtgatgggggag |
11827927 |
T |
|
| Q |
393 |
agagttcaagatggaatgctacgagtttcattcgattttgctttagatcttacatgtgagatccctgatttggtgtttcagaaagcaaagaaactaagga |
492 |
Q |
| |
|
||||||| | || | ||| |||||||| ||| ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
11827928 |
agagttcgtggcgggacgctgcgagtttcgttcaattttgctttagatctttcatgtgagatccctgattcggtgtttcagacagcaaagaaactaagga |
11828027 |
T |
|
| Q |
493 |
ccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatcttcgacaccttcaagtgctc |
592 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
11828028 |
ccattcttttgccatacaacattaacaaccctcgtcttccgcacgaggtaaagatgacaacgtcaacttgtgataagatcttcgacaccttcaagtactc |
11828127 |
T |
|
| Q |
593 |
gctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagtacttgaggtatctagatctttcccataacaac |
692 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11828128 |
gctacgcgtgttggatctacatgacttggggatcaagacagttccaagctctattgaggatgtgaagtacttgaggtatctagatctttcacataacaac |
11828227 |
T |
|
| Q |
693 |
atggagaagcttcctagttgcataacaaatcttatccacttgcaaacattgaaactgtctcaatgtcatgtcctcaaggaattgccaaaagacatggatg |
792 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11828228 |
atggagaagcttcctagttgcataacaaatcttatccacttgcaaacgttgaaactgtctcgatgtcatgtcctcaaagaattgccaaaagacatggatg |
11828327 |
T |
|
| Q |
793 |
atttgagttgcctcaaccatcttgacttagaggggtgcttggatctaactcaaatgccaagtgggataagtaagctcacttccttgcaaacattgtcact |
892 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11828328 |
atttgagttgccttaaccatcttgacttagatggatgcttggatctaactcaaatgccaagtggaataagtaagctcacttctttgcaaacattgtcact |
11828427 |
T |
|
| Q |
893 |
tttcgttgccagcaagaaacaagtcacgggaggactaagatcactcacagatcttaacaaactgagaggccac |
965 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
11828428 |
tttcgtagccagcaagaaacaagtcacgggaggactaagatcactcacagatcttaacaatctgaggggccac |
11828500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 62 - 966
Target Start/End: Original strand, 12038482 - 12039401
Alignment:
| Q |
62 |
tatctattacgacaattttcccacttatcagaagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattaattcaa |
161 |
Q |
| |
|
|||||||||||| || ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
12038482 |
tatctattacgaagatcttcccacgtatcagaagttgtgctttgcatattgttcattgtttccagaagattatttaattgatgccgagagattaattcaa |
12038581 |
T |
|
| Q |
162 |
ctctggactgctgaagggtttct-----tgtc----------aacccagaacaacaatttggtcaagcttgtttcgaagacttcgttcctctggttttcc |
246 |
Q |
| |
|
|| ||||| |||||||| ||||| | || || ||||||||||||||||||| |||||||||| | ||||| |||||| ||||||| | |
|
|
| T |
12038582 |
ctttggacggctgaaggatttctaacaatttcctcaaacaacaatccagaacaacaatttggtcgagcttgtttcaacgactttgttcctttggtttttc |
12038681 |
T |
|
| Q |
247 |
ataaagcgaaaaaagaaagtgaccaccatcagtactgcggtgttgtgaggaacaac---tacttatatagaatgaatcggttgatgcataaactcgcaac |
343 |
Q |
| |
|
|| ||| | || |||||| || |||| ||| | |||||||||| |||||| |||||||||||||| || | ||| ||||||||||| |||| |
|
|
| T |
12038682 |
atcaagtggaagaagaaaacgaaaaccaa---tacggtggtgttgtgacaaacaacaactacttatatagaataaacccgttaatgcataaacttgcaag |
12038778 |
T |
|
| Q |
344 |
gcaagaaatcactg---gtaacgaaaacatcaccatggatgtgatgcgggaaagagttcaagatggaatgctacgagtttcattcgattttgctttagat |
440 |
Q |
| |
|
|| || | || | || |||||||||||| ||||| |||| |||| | ||||| |||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
12038779 |
gctagtcaccatcgacagtcgtgaaaacatcaccgtggattcgatgggggagggtgttcacgatggaatgctacgagtttcgtttgattatgctttagat |
12038878 |
T |
|
| Q |
441 |
cttacatgtgagatccctgatttggtgtttcagaaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgagg |
540 |
Q |
| |
|
| |||| |||||| |||| |||||| ||||||| || ||||| ||||||||||||||||||||||||| | ||||||||| |||||| | |||| |
|
|
| T |
12038879 |
ttgttgtgtgggatcccagattgtgtgtttgagaaagctaaaaaactgaggaccattcttttgccatacaacactgacaaccctcggcttcctgacgagg |
12038978 |
T |
|
| Q |
541 |
taaaggtgacaacatcaacttgtgaaaagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgag |
640 |
Q |
| |
|
|| || ||||||||||||| ||||| |||||||| |||||||||| ||| | |||||||| ||| | ||||| ||||||||||||||| ||||||| |
|
|
| T |
12038979 |
tacagatgacaacatcaacctgtgataagatctttaacaccttcaaa-gcta--tgcgcgtgttagatatgcatgacttggggatcaagacgattccgag |
12039075 |
T |
|
| Q |
641 |
ctctattgaggatgtgaagtacttgaggtatctagatctttcccataacaacatggagaagcttcctagttgcataacaaatcttatccacttgcaaaca |
740 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
12039076 |
ctctattgaagaggtgaagtacttgaggtatctagatctttctcataacaacatagagaagcttcctagttgcatcacaactcttatccacttgcaaacg |
12039175 |
T |
|
| Q |
741 |
ttgaaactgtctcaatgtcatgtcctcaaggaattgccaaaagacatggatgatttgagttgcctcaaccatcttgacttagaggggtgcttggatctaa |
840 |
Q |
| |
|
|||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12039176 |
ttgaaactttctcaatgtcattttctcaaggaattgccaaaagacatggatgatttgagttgcctcaaccatcttgacttagagggatgcttggatctaa |
12039275 |
T |
|
| Q |
841 |
ctcaaatgccaagtgggataagtaagctcacttccttgcaaacattgtcacttttcgttgccagcaagaaacaagtcacgggaggactaagatcactcac |
940 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| || |||||||||||||| || || || ||||||||| | || || |||||||||||| |||||| |
|
|
| T |
12039276 |
ctcaaatgccaagtgggataaataagctcacttctttacaaacattgtcactctttgtagctagcaagaaatacgttacaggaggactaagagaactcac |
12039375 |
T |
|
| Q |
941 |
agatcttaacaaactgagaggccaca |
966 |
Q |
| |
|
||||| |||||||||||||| |||| |
|
|
| T |
12039376 |
cgatctcaacaaactgagaggtcaca |
12039401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 308 - 963
Target Start/End: Complemental strand, 11902573 - 11901921
Alignment:
| Q |
308 |
atatagaatgaatcggttgatgcataaactcgcaacgcaagaaatcactggtaacgaaaacatcaccatggatgtgatgcgggaaagagttcaagatgga |
407 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || || |||| || | |||||||| || || || |||| |||| | |||| ||| |||| |
|
|
| T |
11902573 |
atatagaatgaatcggttaatgcataaactcgcaaggctag---tcacctgtgaagaaaacatgactgtgaattcgatgggggataaagttaaaggtgga |
11902477 |
T |
|
| Q |
408 |
atgctacgagtttcattcgattttgctttagatcttacatgtgagatccctgatttggtgtttcagaaagcaaagaaactaaggaccattcttttgccat |
507 |
Q |
| |
|
||| | |||| |||||| ||||||||||| ||||| |||||| |||||| || ||| |||| | |||||||||||||| || |||||||||||||| | |
|
|
| T |
11902476 |
atgttgcgagcttcatttgattttgctttggatctgtcatgtgggatcccagacttgttgttcgataaagcaaagaaactgagaaccattcttttgccgt |
11902377 |
T |
|
| Q |
508 |
acaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatcttcgacaccttcaagtgctcgctacgcgtgttgga |
607 |
Q |
| |
|
||| || ||||||||||| ||||| || ||||| ||| ||||||||||||| || || ||||||||| |||||||||||| | ||||| ||| |||| |
|
|
| T |
11902376 |
acagcactaacaaccctcgccttccacacgaggtgaagatgacaacatcaacatgcgataagatcttcaacaccttcaagtcc---ctacgtgtgctgga |
11902280 |
T |
|
| Q |
608 |
tctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagtacttgaggtatctagatctttcccataacaacatggagaagcttcct |
707 |
Q |
| |
|
||||||||| |||||||| |||| |||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||| ||| |
|
|
| T |
11902279 |
tctacatgacttggggattaagatggttccaacatctattgaggaggtgaagtacttgaggtatctagatctttctcataacaacatagaaaagctacct |
11902180 |
T |
|
| Q |
708 |
agttgcataacaaatcttatccacttgcaaacattgaaactgtctcaatgtcatgtcctcaaggaattgccaaaagacatggatgatttgagttgcctca |
807 |
Q |
| |
|
|||| ||| || || |||||||||||||||||||||||| | || |||||||| ||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
11902179 |
agttccatcactaagcttatccacttgcaaacattgaaattatcacaatgtcacatcctcaaggaattgccaaaagacttggatggcctgagttgcctca |
11902080 |
T |
|
| Q |
808 |
accatcttgacttagaggggtgcttggatctaactcaaatgccaagtgggataagtaagctcacttccttgcaaacattgtcacttttcgttgccagcaa |
907 |
Q |
| |
|
||||||||||| | ||||| ||| ||||||||||||| ||||||||||| |||| |||||||||||| || |||||||||||||| || || |||||||| |
|
|
| T |
11902079 |
accatcttgacattgagggatgcctggatctaactcacatgccaagtggtataaataagctcacttctttacaaacattgtcactctttgtggccagcaa |
11901980 |
T |
|
| Q |
908 |
gaaacaag---tcacgggaggactaagatcactcacagatcttaacaaactgagaggcc |
963 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||| ||||||||||| |||||||||| |
|
|
| T |
11901979 |
gaaacaagtaatcactggaggactaagagaactcacggatcttaacaatctgagaggcc |
11901921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 390 - 913
Target Start/End: Original strand, 11731708 - 11732228
Alignment:
| Q |
390 |
gaaagagttcaagatggaatgctacgagtttcattcgattttgctttagatcttacatgtgagatccctgatttggtgtttcagaaagcaaagaaactaa |
489 |
Q |
| |
|
|||| |||| |||| |||||||| |||| ||| || ||||||| ||| |||||| | |||| ||| || |||| | ||||| | |||||||||||| | |
|
|
| T |
11731708 |
gaaaaagttgaagaaggaatgctgcgagcttcgtttgattttggtttggatctttcgtgtgggattccagattcgatgttt---atagcaaagaaactga |
11731804 |
T |
|
| Q |
490 |
ggaccattcttttgccatacaa---cattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatcttcgacaccttcaa |
586 |
Q |
| |
|
|||||||| | ||||||||||| |||||||||||||| |||||| || ||||| ||| |||| || |||| ||||| ||||||||| |||||||||| |
|
|
| T |
11731805 |
ggaccattttattgccatacaaaaacattaacaaccctcggcttccacacgaggtgaagatgacgacgccaacctgtgataagatcttcaacaccttcaa |
11731904 |
T |
|
| Q |
587 |
gtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagtacttgaggtatctagatctttcccat |
686 |
Q |
| |
|
|| | || |||||||||||||||||| ||||||||||||| || || | |||||||||||| |||| |||||||||| ||||||||| ||||| |
|
|
| T |
11731905 |
gtccatgca---cgtgttggatctacatgacttggggatcaagattgtaccaacctctattgaggagatgaaatacttgaggtttctagatctatcccac |
11732001 |
T |
|
| Q |
687 |
aacaacatggagaagcttcctagttgcataacaaatcttatccacttgcaaacattgaaactgtctcaatgtcatgtcctcaaggaattgccaaaagaca |
786 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||| |||||||| |||||||| || | |||||||||||||||||||||||||||||| |
|
|
| T |
11732002 |
aacaacatagagaagcttcctagttgcatcacaaagcttatccatttgcaaaccttgaaactctcctactgtcatgtcctcaaggaattgccaaaagact |
11732101 |
T |
|
| Q |
787 |
tggatgatttgagttgcctcaaccatcttgacttagaggggtgcttggatctaactcaaatgccaagtgggataagtaagctcacttccttgcaaacatt |
886 |
Q |
| |
|
|| | ||| ||| | |||||| ||||||| || | ||||| ||||||||||||||||| ||||||| |||||| ||| ||||||||||| |||||||| |
|
|
| T |
11732102 |
tgaaggatctgactcgcctcagccatcttaacattgagggttgcttggatctaactcacatgccaaccgggatagataaactcacttccttacaaacatt |
11732201 |
T |
|
| Q |
887 |
gtcacttttcgttgccagcaagaaaca |
913 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
11732202 |
gtcacttttcgtggccagcaagaaaca |
11732228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 93 - 247
Target Start/End: Complemental strand, 11902770 - 11902616
Alignment:
| Q |
93 |
aagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagggtttcttgtcaacc |
192 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| || | |
|
|
| T |
11902770 |
aagttatgttttgcatattgttcattgtttccaagagattatttgattgatgctgagagattaattgaactctggactgctgaaggatttctcaccattc |
11902671 |
T |
|
| Q |
193 |
cagaacaacaatttggtcaagcttgtttcgaagacttcgttcctctggttttcca |
247 |
Q |
| |
|
|| ||||||||||| ||| | |||||||| | ||||| ||||| |||||||||| |
|
|
| T |
11902670 |
cacaacaacaattttgtcgaccttgtttcaatgactttgttccgttggttttcca |
11902616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 11731429 - 11731508
Alignment:
| Q |
99 |
tgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagg |
178 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||||||||||| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
11731429 |
tgctttgcattttgttcattgtttccagaacatcatttgattgatgccgagagattaattcaactttggtttgctgaagg |
11731508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 11975068 - 11974974
Alignment:
| Q |
89 |
tcagaagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagggtttc |
183 |
Q |
| |
|
||||||||| || |||| || ||||||||||||||| ||||| |||||||||||| |||||||||||||| |||| ||| || ||||| |||| |
|
|
| T |
11975068 |
tcagaagttttgttttgaattttgttcattgtttcctcaagatcatttgattgatgtcgagagattaattcatctcttgacagcagaaggatttc |
11974974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University