View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18108_low_11 (Length: 506)

Name: NF18108_low_11
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18108_low_11
NF18108_low_11
[»] chr6 (6 HSPs)
chr6 (20-463)||(31601774-31602214)
chr6 (22-83)||(10682533-10682594)
chr6 (20-64)||(30775381-30775425)
chr6 (22-64)||(2844161-2844203)
chr6 (22-95)||(34427103-34427177)
chr6 (19-72)||(30349199-30349252)
[»] chr7 (8 HSPs)
chr7 (20-70)||(12879279-12879329)
chr7 (20-93)||(43598849-43598922)
chr7 (24-93)||(41159367-41159436)
chr7 (22-95)||(36725816-36725889)
chr7 (22-71)||(40160367-40160416)
chr7 (22-70)||(48252913-48252961)
chr7 (22-92)||(22790435-22790505)
chr7 (26-64)||(43692580-43692618)
[»] chr3 (6 HSPs)
chr3 (22-95)||(49644389-49644462)
chr3 (22-70)||(28939698-28939746)
chr3 (22-64)||(11467231-11467273)
chr3 (20-70)||(20809643-20809693)
chr3 (33-70)||(35496132-35496169)
chr3 (22-70)||(40793197-40793245)
[»] chr1 (6 HSPs)
chr1 (20-95)||(50428501-50428576)
chr1 (22-70)||(46823657-46823705)
chr1 (20-63)||(1035776-1035819)
chr1 (20-63)||(37457655-37457698)
chr1 (20-64)||(23571030-23571074)
chr1 (22-70)||(51613279-51613327)
[»] chr4 (10 HSPs)
chr4 (31-92)||(43264457-43264518)
chr4 (20-93)||(46382040-46382113)
chr4 (22-93)||(38567992-38568063)
chr4 (22-93)||(55875998-55876069)
chr4 (22-70)||(2681132-2681180)
chr4 (22-70)||(9268356-9268404)
chr4 (22-70)||(52327034-52327082)
chr4 (20-70)||(206290-206340)
chr4 (20-92)||(37556241-37556313)
chr4 (22-70)||(41377407-41377455)
[»] chr2 (5 HSPs)
chr2 (22-70)||(9104595-9104643)
chr2 (22-70)||(32914484-32914532)
chr2 (22-118)||(40095816-40095913)
chr2 (32-70)||(7395460-7395498)
chr2 (30-70)||(13081147-13081187)
[»] scaffold0015 (1 HSPs)
scaffold0015 (22-70)||(56613-56661)
[»] chr8 (2 HSPs)
chr8 (22-70)||(9682385-9682433)
chr8 (22-70)||(17312877-17312925)
[»] chr5 (3 HSPs)
chr5 (22-63)||(4925098-4925139)
chr5 (23-71)||(2907793-2907841)
chr5 (20-64)||(39060227-39060271)


Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 463
Target Start/End: Complemental strand, 31602214 - 31601774
Alignment:
Q  20 tatagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagcgaggtccatatataccacccacttcaatgacataatgtggatgca 119  Q
    |||| ||||| | ||||||||||||||||||||||||||||||||||||||||  |||||| || |||||||||||||||||||||||||||||||||||    
T  31602214 tataattgagatatttaaataattgagaagtgtgaattaatataaaatattgaatgaggtctatttataccacccacttcaatgacataatgtggatgca 31602115  T
Q  120 ttaaagttccttttattgaaaagctttcgacaaacatggtgaagacatattaatgtggttgttatagtggctaaaatggtttttgtctaaaggtaaagaa 219  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31602114 ctaaagttccttttattgaaaagctttcgacaaacatggtgaagacatattaatgtggttgttatagtggctaaaatggtttttgtctaaaggtaaagaa 31602015  T
Q  220 taatatacattggataacttttttattaatgttaaaagaaaaagaatatacctaagtaggnnnnnnngtacaccatcctatttgaaaataaaactaattg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  31602014 taatatacattggataacttttttattaatgttaaaagaaaaagaatatacctaagtaggaaaaaaagtacaccatcctatttgaaaataaaactaattg 31601915  T
Q  320 aaataaaatttgaggtgtgtgtcattccaatccatgacctcaaatagatattttcgatgagatcctcaagccaatatgcacc--tttgtctaaggtaaag 417  Q
    |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  31601914 aaataaaatttgaggtgtgtgtcat-----tccatgacctcaaatagatattttcgatgagatcctcaagccaatatgcacctttttgtctaaggtaaag 31601820  T
Q  418 ttgatgctatatggtccttctcactagctgctactagctttctatg 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31601819 ttgatgctatatggtccttctcactagctgctactagctttctatg 31601774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 10682533 - 10682594
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagcgaggtccat 83  Q
    ||||||||| |||||||||||||||||||||||| |||||||| ||||| || | |||||||    
T  10682533 tagttgagtggtttaaataattgagaagtgtgaagtaatataatatattaagtggggtccat 10682594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 30775425 - 30775381
Alignment:
Q  20 tatagttgagttgtttaaataattgagaagtgtgaattaatataa 64  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||    
T  30775425 tatagttgagtggtttaaataattgaaaagtgtgaagtaatataa 30775381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 2844161 - 2844203
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataa 64  Q
    ||||||||| ||||||||||||| |||||||||| ||||||||    
T  2844161 tagttgagtggtttaaataattgggaagtgtgaagtaatataa 2844203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 34427103 - 34427177
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgag-cgaggtccatatataccaccca 95  Q
    ||||||||| |||||||||||| |||||||| || ||| |||| |||||| | |||| ||||| |||||||||||    
T  34427103 tagttgagtagtttaaataattaagaagtgttaagtaacataatatattgggacgagatccatttataccaccca 34427177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 30349252 - 30349199
Alignment:
Q  19 ttatagttgagttgtttaaataattgagaagtgtgaattaatataaaatattga 72  Q
    ||||| |||| ||||||||||| ||||||||| |||| |||||||| |||||||    
T  30349252 ttataattgaattgtttaaatatttgagaagtatgaagtaatataatatattga 30349199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 12879329 - 12879279
Alignment:
Q  20 tatagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  12879329 tatagttgtgttgtttaaataattgagaagtgtgaagtaatataaaatatt 12879279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 43598849 - 43598922
Alignment:
Q  20 tatagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagcgaggtccatatataccacc 93  Q
    ||||||||||| |||||||||||||||||||||||| |||||||| ||||| ||   ||||||| |||||||||    
T  43598849 tatagttgagtggtttaaataattgagaagtgtgaactaatataatatattaagtagggtccatttataccacc 43598922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 41159436 - 41159367
Alignment:
Q  24 gttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagcgaggtccatatataccacc 93  Q
    |||||||||||||||||||||  ||||||||| |||||||| |||||||| |  |||||| |||||||||    
T  41159436 gttgagttgtttaaataattggaaagtgtgaaataatataatatattgagtggcgtccatttataccacc 41159367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 36725816 - 36725889
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagcgaggtccatatataccaccca 95  Q
    ||||||||| ||||||||||||||||||||| || |||||||||  ||| || | | ||||| |||||||||||    
T  36725816 tagttgagtggtttaaataattgagaagtgtaaaataatataaagaattaagtgggatccatttataccaccca 36725889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 40160367 - 40160416
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattg 71  Q
    |||||||||||||||||||||||||||| || || |||||||| ||||||    
T  40160367 tagttgagttgtttaaataattgagaagcgttaagtaatataatatattg 40160416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 48252913 - 48252961
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    ||||||||| |||||||||||||  ||||||||| ||||||||||||||    
T  48252913 tagttgagtggtttaaataattggaaagtgtgaagtaatataaaatatt 48252961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 22790505 - 22790435
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagcgaggtccatatataccac 92  Q
    ||||||| |||||||||||||||| ||| || || ||||| ||||||||| | ||| ||||| ||||||||    
T  22790505 tagttgaattgtttaaataattgaaaagcgtaaaataatacaaaatattgtgtgagatccatttataccac 22790435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 43692580 - 43692618
Alignment:
Q  26 tgagttgtttaaataattgagaagtgtgaattaatataa 64  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  43692580 tgagtggtttaaataattgagaagtgtgaaataatataa 43692618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 49644389 - 49644462
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagcgaggtccatatataccaccca 95  Q
    ||||||||| |||||||||||||||||||||||| |||||||| ||||| || | ||||||| || ||||||||    
T  49644389 tagttgagtggtttaaataattgagaagtgtgaagtaatataatatattaagtggggtccatttaaaccaccca 49644462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 28939746 - 28939698
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    ||||||||| |||||||||||||||||||||||| |||||||| |||||    
T  28939746 tagttgagtagtttaaataattgagaagtgtgaagtaatataatatatt 28939698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 11467273 - 11467231
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataa 64  Q
    ||||||| | |||||||||||||||||||||||| ||||||||    
T  11467273 tagttgattggtttaaataattgagaagtgtgaagtaatataa 11467231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 20809693 - 20809643
Alignment:
Q  20 tatagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    ||||||| |||||||||||||||| | |||| |||| ||||||||||||||    
T  20809693 tatagttaagttgtttaaataattaaaaagtatgaagtaatataaaatatt 20809643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 35496169 - 35496132
Alignment:
Q  33 tttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  35496169 tttaaataattgagaagtgtgaagtaatataatatatt 35496132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 40793245 - 40793197
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    ||||||||| |||||||||||||| ||||| ||| ||||||||| ||||    
T  40793245 tagttgagtggtttaaataattgaaaagtgagaagtaatataaagtatt 40793197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 50428501 - 50428576
Alignment:
Q  20 tatagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagcgaggtccatatataccaccca 95  Q
    |||||||||||  ||||||||||||||||||||||| ||||||||  ||||| | ||| ||||| |||||||||||    
T  50428501 tatagttgagtgatttaaataattgagaagtgtgaagtaatataatttattgcgtgagatccatttataccaccca 50428576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 46823657 - 46823705
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||| ||||    
T  46823657 tagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatt 46823705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 1035819 - 1035776
Alignment:
Q  20 tatagttgagttgtttaaataattgagaagtgtgaattaatata 63  Q
    ||||||| ||| |||||||||||||||||||||||| |||||||    
T  1035819 tatagtttagtggtttaaataattgagaagtgtgaaataatata 1035776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 37457698 - 37457655
Alignment:
Q  20 tatagttgagttgtttaaataattgagaagtgtgaattaatata 63  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||    
T  37457698 tatagttgagtggttttaataattgagaagtgtgaaataatata 37457655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 23571030 - 23571074
Alignment:
Q  20 tatagttgagttgtttaaataattgagaagtgtgaattaatataa 64  Q
    ||||||||||||||||||||||| || || |||||| ||||||||    
T  23571030 tatagttgagttgtttaaataatggaaaaatgtgaagtaatataa 23571074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 51613327 - 51613279
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    ||||||||| |||||||||||||  ||||||||| ||||||||| ||||    
T  51613327 tagttgagtggtttaaataattggaaagtgtgaagtaatataaattatt 51613279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 43264518 - 43264457
Alignment:
Q  31 tgtttaaataattgagaagtgtgaattaatataaaatattgagcgaggtccatatataccac 92  Q
    ||||||||||||||||||||||||| |||||||| |||||  | ||||||||| ||||||||    
T  43264518 tgtttaaataattgagaagtgtgaagtaatataatatattaggtgaggtccatttataccac 43264457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 46382040 - 46382113
Alignment:
Q  20 tatagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagcgaggtccatatataccacc 93  Q
    |||||| |||| |||||||||||||||||||||||| |||||||| ||||| ||   ||||||| |||||||||    
T  46382040 tatagtggagtggtttaaataattgagaagtgtgaactaatataatatattaagtagggtccatttataccacc 46382113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 38567992 - 38568063
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagcgaggtccatatataccacc 93  Q
    ||||||||| |||||||||||||| ||||  ||| |||||||| |||||||| |||||||||  ||||||||    
T  38567992 tagttgagtggtttaaataattgaaaagtaagaagtaatataatatattgagtgaggtccattcataccacc 38568063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 55876069 - 55875998
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagcgaggtccatatataccacc 93  Q
    ||||||| | |||||||||||||||||||||||| |||||||| ||||| ||   ||||||| |||||||||    
T  55876069 tagttgaatagtttaaataattgagaagtgtgaagtaatataatatattaagtagggtccatttataccacc 55875998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 2681132 - 2681180
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||| ||||    
T  2681132 tagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatt 2681180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 9268404 - 9268356
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||| ||||    
T  9268404 tagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatt 9268356  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 52327034 - 52327082
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    |||||||||  ||||||||||||| ||||||||| ||||||||||||||    
T  52327034 tagttgagtgatttaaataattgaaaagtgtgaagtaatataaaatatt 52327082  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 206290 - 206340
Alignment:
Q  20 tatagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    ||||||||| |||||||||||||||| || | |||| ||||||||||||||    
T  206290 tatagttgaattgtttaaataattgaaaaatatgaaataatataaaatatt 206340  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 37556313 - 37556241
Alignment:
Q  20 tatagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagcgaggtccatatataccac 92  Q
    ||||||||||| ||||||||||||||||| |||| | || ||||||| ||| | || |||| || ||||||||    
T  37556313 tatagttgagtagtttaaataattgagaaatgtgtaatattataaaaaattaaacggggtctatttataccac 37556241  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 41377407 - 41377455
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    ||||||||| ||| |||||||||||||||| ||| |||||||| |||||    
T  41377407 tagttgagtagttaaaataattgagaagtgggaagtaatataatatatt 41377455  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 9104643 - 9104595
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  9104643 tagttgagtggtttaaataattgagaattgtgaaataatataaaatatt 9104595  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 32914484 - 32914532
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  32914484 tagttgagtggtttaaataattgaaaagtgtgaagtaatataaaatatt 32914532  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 40095816 - 40095913
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagcgaggtccatatataccacccacttcaatgacata-atgtggatgc 118  Q
    ||||||||| ||||||||||||||||||||| || |||||||| |||||    | ||||||| ||||||||| |  | ||||||||| ||||||||||    
T  40095816 tagttgagtagtttaaataattgagaagtgtaaagtaatataatatattagatggggtccatttataccaccaaaatgaatgacatagatgtggatgc 40095913  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 7395460 - 7395498
Alignment:
Q  32 gtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  7395460 gtttaaataattgaaaagtgtgaagtaatataaaatatt 7395498  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 13081147 - 13081187
Alignment:
Q  30 ttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    ||||||||||||||||||| |||||| ||| ||||||||||    
T  13081147 ttgtttaaataattgagaaatgtgaaataacataaaatatt 13081187  T

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Target: scaffold0015 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 56613 - 56661
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    ||||||||| ||||||||||||||||||||| || |||||||| |||||    
T  56613 tagttgagtggtttaaataattgagaagtgtaaagtaatataatatatt 56661  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 9682385 - 9682433
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||| ||||    
T  9682385 tagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatt 9682433  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 17312877 - 17312925
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 70  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||| ||||    
T  17312877 tagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatt 17312925  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 4925139 - 4925098
Alignment:
Q  22 tagttgagttgtttaaataattgagaagtgtgaattaatata 63  Q
    ||||||||| |||||||||||||| ||||||||| |||||||    
T  4925139 tagttgagtggtttaaataattgaaaagtgtgaagtaatata 4925098  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 2907841 - 2907793
Alignment:
Q  23 agttgagttgtttaaataattgagaagtgtgaattaatataaaatattg 71  Q
    |||||||||||||||||||||  ||| |||||| |||| ||||||||||    
T  2907841 agttgagttgtttaaataattaggaaatgtgaagtaatgtaaaatattg 2907793  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 39060271 - 39060227
Alignment:
Q  20 tatagttgagttgtttaaataattgagaagtgtgaattaatataa 64  Q
    ||||||||||| ||||||||||| || ||||||||| ||||||||    
T  39060271 tatagttgagtggtttaaataatcgaaaagtgtgaagtaatataa 39060227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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