View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18108_low_12 (Length: 468)
Name: NF18108_low_12
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 19 - 456
Target Start/End: Complemental strand, 9074232 - 9073795
Alignment:
| Q |
19 |
aattcacctcaagcttctacttacaataattgtaactataactatgctcaaggcatgcaaattcaaagcctatcaggttgttcaccacctcgttttgcat |
118 |
Q |
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| T |
9074232 |
aattcacctcaagcttctacttacaataattgtaactataactatgctcaaggcatgcaaattcaaagcctatcaggttgttcaccacctcgttttgcat |
9074133 |
T |
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| Q |
119 |
cacaaattggttcattgaatagtaataaccaacaaaaagggaaaggacttagtccacttcatagagtatttaattcaccaaataatcaatatatgcaaca |
218 |
Q |
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| T |
9074132 |
cacaaattggttcattgaatagtaataaccaacaaaaagggaaaggacttagtccacttcatagagtatttaattcaccaaataatcaatatatgcaaca |
9074033 |
T |
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| Q |
219 |
tgttgagaatctttcattgccagctattgaagagttcttggaagattttcaaggtgatgttgatcatttttcatcaacaaaggtttcttctgaatgtttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9074032 |
tgttgagaatctttcattgccagctattgaagagttcttggaagattttcaaggtgatgttgatcatttttcatcaacaaaggtttcttctgaatgtttt |
9073933 |
T |
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| Q |
319 |
gacatggaaactccaatatcaacaattttggatagtttaacaatgcaaaattcttcaagctatggtgcttctgttaatgaagaatccactcttttacatg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9073932 |
gacatggaaactccaatatcaacaattttggatagtttaacaatgcaaaattcttcaagctatggtgcttctgttaatgaagaatccactcttttacatg |
9073833 |
T |
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| Q |
419 |
gtggtaattcttcttctcaaatttctcaagagagtgat |
456 |
Q |
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| T |
9073832 |
gtggtaattcttcttctcaaatttctcaagagagtgat |
9073795 |
T |
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