View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18108_low_14 (Length: 373)
Name: NF18108_low_14
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 52372739 - 52372401
Alignment:
| Q |
18 |
atctgtggaaatccattggagagtttgtaacatgtgagctagtttattgttgtttttatgagaggatgagatgtagtgttgaatggttgaaatgtaattg |
117 |
Q |
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| T |
52372739 |
atctgtggaaatccattggagagtttgtaacatgtgagctagtttattgttgtttttgtgagaggatgagatgtagtgttgaatggttgaaatgtaattg |
52372640 |
T |
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| Q |
118 |
gggtgtgctatggcagcttttggtttagtctgtgaaataactcttataaggtgatagtagnnnnnnncattggtaaaagaagggtgaggagggacaatag |
217 |
Q |
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| T |
52372639 |
gggtgtgctatggcagcttttggtttagtctgtgaaataactcttataaggtgatagtagtttttttcattggtaaaagaagggtgaggagggacaatag |
52372540 |
T |
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| Q |
218 |
ggacggttaaaagaccagctctttgacaaccaaaaatgaccttaacaagatcaagtcctggagagcaaagaataaggactgtgtcacctctttgaagtgg |
317 |
Q |
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| T |
52372539 |
ggacggttaaaagaccagctctttgacaaccaaaaatgaccttaacaagatcaagtcctggagagcaaagaataaggactgtgtcacctctttgaagtgg |
52372440 |
T |
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| Q |
318 |
aaagaggagttgattggagattatatctacagaggtatt |
356 |
Q |
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| T |
52372439 |
aaagaggagttgattggagattatatctacagaggtatt |
52372401 |
T |
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