View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18108_low_15 (Length: 371)
Name: NF18108_low_15
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 52 - 355
Target Start/End: Complemental strand, 39300422 - 39300125
Alignment:
| Q |
52 |
caatcaaaagcaaaaccgtacgtaacacccttttgttcttgttcnnnnnnnaaacacacaaaatggcatctgaacaattgtctcgcagagaaaacaccac |
151 |
Q |
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| T |
39300422 |
caatcaaaagcaaaaccgtacgtaacacccttttgttcttgtt------aaacacacacaaaatggcatctgaacaattgtctcgcagagaaaacaccac |
39300329 |
T |
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| Q |
152 |
aaacgagagagatattcatgttgaaaaagacagagtcccaaagatgacaactcattttgaacaacttacagtggtagacaaggaaccaccacatggtagc |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39300328 |
aaacgagagagatattcatgttgaaaaagacagagtcccaaagatgactacccattttgaacaacttacagtggtagacaaggaaccaccacatggtagc |
39300229 |
T |
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| Q |
252 |
attgaagcattacaaggtggtgaaatgaacaaagatcatgcaggaaaagccattggagatattggtggaagaggaagatcaagagagactcatgaacttg |
351 |
Q |
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| T |
39300228 |
attgaagcattacaaggtggtgaaatgaacaaagatcatgcaggaaaagccattggagatattggtggaagaggaagatcaagagagactcatgaacttg |
39300129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 39299940 - 39299891
Alignment:
| Q |
306 |
ggagatattggtggaagaggaagatcaagagagactcatgaacttggttc |
355 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
39299940 |
ggagatattggtggaagaggaagagaaagagagagccatgaacttggttc |
39299891 |
T |
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