View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18108_low_16 (Length: 369)

Name: NF18108_low_16
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18108_low_16
NF18108_low_16
[»] chr4 (2 HSPs)
chr4 (5-364)||(16988055-16988414)
chr4 (168-263)||(35088802-35088897)
[»] chr2 (3 HSPs)
chr2 (5-364)||(21807540-21807899)
chr2 (19-316)||(20971202-20971497)
chr2 (169-259)||(23682248-23682338)
[»] chr5 (4 HSPs)
chr5 (21-316)||(26465292-26465587)
chr5 (61-257)||(23884074-23884270)
chr5 (174-325)||(23958779-23958930)
chr5 (64-100)||(23958669-23958705)
[»] chr6 (5 HSPs)
chr6 (20-356)||(34068262-34068598)
chr6 (153-278)||(20850027-20850152)
chr6 (151-275)||(14617738-14617862)
chr6 (145-223)||(28561533-28561611)
chr6 (84-325)||(12302377-12302618)
[»] chr7 (5 HSPs)
chr7 (159-259)||(3004921-3005021)
chr7 (141-250)||(8853841-8853950)
chr7 (168-217)||(18477565-18477614)
chr7 (151-215)||(19666209-19666273)
chr7 (159-253)||(19813298-19813392)
[»] chr1 (2 HSPs)
chr1 (159-259)||(37737401-37737501)
chr1 (162-265)||(13427891-13427994)
[»] scaffold0257 (1 HSPs)
scaffold0257 (151-304)||(8273-8426)
[»] chr8 (2 HSPs)
chr8 (81-253)||(18551164-18551336)
chr8 (204-262)||(2998101-2998159)
[»] chr3 (3 HSPs)
chr3 (108-217)||(44667108-44667217)
chr3 (87-310)||(18963220-18963443)
chr3 (312-364)||(4643364-4643416)


Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 5 - 364
Target Start/End: Original strand, 16988055 - 16988414
Alignment:
Q  5 acatcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988055 acatcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatc 16988154  T
Q  105 ctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtt 204  Q
    ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988155 ctagctggaaattctatctctgaatttcaagatattaaagccattatgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtt 16988254  T
Q  205 tagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttc 304  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16988255 tagaggttgctcattcctcacaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaggatttttagcttccaaacctgtttc 16988354  T
Q  305 tacaccatctgacccttcatgaaaattacacactgattctagttctccttatgatgatgt 364  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16988355 tacaccatctgacccttcatgcaaattacacactgattctagttctccttatgatgatgt 16988414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 35088802 - 35088897
Alignment:
Q  168 atcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgat 263  Q
    |||||||||||||| ||  | |||||||| |||||| | ||||||||||||||   |  ||| || ||||| ||||||||||||||||| ||||||    
T  35088802 atcaaggatcttggtcaactcaaatacttccttggtattgaggttgctcattccaaagcaggcatttctctctgtcaaagaaagtattgccttgat 35088897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 5 - 364
Target Start/End: Complemental strand, 21807899 - 21807540
Alignment:
Q  5 acatcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21807899 acatcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacaattttacttgtgtatgttgatgatgtgatc 21807800  T
Q  105 ctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtt 204  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21807799 ctagctggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtt 21807700  T
Q  205 tagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttc 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  21807699 tagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactaatacatgatttttagcttccaaacctatttc 21807600  T
Q  305 tacaccatctgacccttcatgaaaattacacactgattctagttctccttatgatgatgt 364  Q
    ||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  21807599 tacgccatctgacccttcctgcaaattacacactgattctagttctccttatgatgatgt 21807540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 20971497 - 20971202
Alignment:
Q  19 ttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatcctagcaggaaattc 118  Q
    |||||||||| |||||||||||||||||||| |||||||| | | ||||||||||||  || ||||| |||||||||||||||||  | |  || | |||    
T  20971497 ttcaatctgcatctgatcactctctcttcattaagaagacagatacttcattcacagccttgcttgtttatgttgatgatgtgattattgttggtacttc 20971398  T
Q  119 tatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcat 218  Q
      | ||||| || || || || |||  || |||||||||||| || ||||| |||| |||||| || || ||||| ||||||||| ||||||||||| ||    
T  20971397 actttctgagtttcaggacatcaaaatcaatctgcattcttccttcaagattaaggctcttggtcaattgaaatattttcttggtctagaggttgcttat 20971298  T
Q  219 tcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttctacaccatctga 316  Q
    || ||| |  | ||||||||||| |||||||| || |||||||| |  |  ||||||||| | ||| | ||||| ||||||| |||||||||||||||    
T  20971297 tcatcacagtgcatctctctttgccaaagaaaataatgtcttgacc--tagactgatacatgttttcttgcttcaaaacctgattctacaccatctga 20971202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 23682248 - 23682338
Alignment:
Q  169 tcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtct 259  Q
    |||| ||||||||||| |||||||| || ||||||||||||||||||||||||  | |||| || ||  | ||||||||||||||||||||    
T  23682248 tcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggtatttcattgtgtcaaagaaagtattgtct 23682338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 316
Target Start/End: Complemental strand, 26465587 - 26465292
Alignment:
Q  21 caatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatcctagcaggaaattcta 120  Q
    |||||| | |||||||| ||||| ||||| ||||||||   | |||||||||||| ||| ||||| |||||||||||||||||| |  | || | |||      
T  26465587 caatctacatctgatcattctcttttcattaagaagacatatacttcattcacagctttgcttgtttatgttgatgatgtgatcatcactggtacttcac 26465488  T
Q  121 tctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattc 220  Q
    |||||||||||||||| || |||||||||||||||||| ||||  | || |||||||||||||| || |||||||||||||||||||| |||||||||||    
T  26465487 tctctgaattccaagacatcaaagccattctgcattctgctttagaaattaaggatcttggccaattgaaatactttcttggtttagaagttgctcattc 26465388  T
Q  221 ttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttctacaccatctga 316  Q
     ||| |||| ||||||||||| |||||||| ||||||||||||||  ||||||||| | ||||| | ||| | ||||||| |||||||||||||||    
T  26465387 ctcacaaggcatctctctttgccaaagaaaatattgtcttgatctcctaactgatataggatttcttgctgcaaaacctgcttctacaccatctga 26465292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 257
Target Start/End: Complemental strand, 23884270 - 23884074
Alignment:
Q  61 cttcttcattcacagttttacttgtgtatgttgatgatgtgatcctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttc 160  Q
    |||||||||||||| |  | ||||||||||| |||||| | || || |||||||| ||  | | |||||| ||  | || |||| |||||| ||   |||    
T  23884270 cttcttcattcacaatacttcttgtgtatgtggatgatatcattcttgcaggaaactcactttatgaatttcagaacatcaaagacattcttcacaattc 23884171  T
Q  161 ttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgt 257  Q
    ||| || ||||| ||||||||||| |||||||| || |||||||||||||| |||||||||  | |||||||||| || || |||||||||||||||    
T  23884170 tttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggtagctcattctaaacaaggaatctcactatgccaaagaaagtattgt 23884074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 174 - 325
Target Start/End: Original strand, 23958779 - 23958930
Alignment:
Q  174 gatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctt-tgtcaaagaaagtattgtcttgatcttttaact 272  Q
    ||||||||||| || |||||||| |||||||||||||||||||| |||||| |||| || | |||| ||||||||||| ||||| ||||||||| | |||    
T  23958779 gatcttggccaattgaaatacttccttggtttagaggttgctcactcttcacaagggat-tttcttatgtcaaagaaaatattgccttgatcttctgact 23958877  T
Q  273 gatacaagatttttagcttccaaacctgtttctacaccatctgacccttcatg 325  Q
    || ||| | ||  | || ||||||||| |||||||||||| ||| || |||||    
T  23958878 gacacatgtttccttgcatccaaacctctttctacaccatttgatccatcatg 23958930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 23958669 - 23958705
Alignment:
Q  64 cttcattcacagttttacttgtgtatgttgatgatgt 100  Q
    ||||||||||||||||||| || ||||||||||||||    
T  23958669 cttcattcacagttttactggtttatgttgatgatgt 23958705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 356
Target Start/End: Original strand, 34068262 - 34068598
Alignment:
Q  20 tcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatcctagcaggaaattct 119  Q
    ||||||| |||||||||| ||| | |||| |||||||||  || ||||||| || || ||||| || ||||| |||||||||||  | || ||  | |||    
T  34068262 tcaatctacttctgatcattctttgttcaccaagaagaccactacttcatttactgtgttactagtctatgtggatgatgtgattattgctggtgactct 34068361  T
Q  120 atctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcatt 219  Q
     | |||||| | ||    || ||| ||||| ||||||| |||||||| |||||||| ||||| || || |||||||| ||||| ||||||||||||||||    
T  34068362 ctttctgaacttcactccatcaaatccattttgcattcctcttttaaaatcaaggaccttggtcaattgaaatacttccttggcttagaggttgctcatt 34068461  T
Q  220 cttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttctacaccatctgaccc 319  Q
    ||||  |||| || ||||| ||||| ||||| ||||| |||||| |  ||||||||||  |  || | |||| |||||||||||| || |||||||||||    
T  34068462 cttctgaaggcatttctctatgtcagagaaaatattgccttgatttgctaactgatactggtcttctggcttgcaaacctgtttccactccatctgaccc 34068561  T
Q  320 ttcatgaaaattacacactgattctagttctccttat 356  Q
    ||| || || ||||| | |||||||||| | ||||||    
T  34068562 ttcttgcaagttacataatgattctagtgccccttat 34068598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 153 - 278
Target Start/End: Complemental strand, 20850152 - 20850027
Alignment:
Q  153 cattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagt 252  Q
    |||||||| || || || || |||||||| ||||| || ||||||||||||||| || ||||||| |||||| ||||||| | | | || || |||||||    
T  20850152 cattcttcattcaaaattaaagatcttggtcagttgaagtactttcttggtttaaagtttgctcactcttcacaaggaatatttttgtgccagagaaagt 20850053  T
Q  253 attgtcttgatcttttaactgataca 278  Q
    |||||||||||||| | |||||||||    
T  20850052 attgtcttgatcttctcactgataca 20850027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 151 - 275
Target Start/End: Original strand, 14617738 - 14617862
Alignment:
Q  151 tgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaa 250  Q
    ||||||| ||||| ||||| |||||  | ||||| || ||||| || |||||||||||||||||||| |||||  |||| || || |||| | | |||||    
T  14617738 tgcattcctctttcaagattaaggacttgggccaattgaaataattccttggtttagaggttgctcactcttctcaaggcatttcacttttttagagaaa 14617837  T
Q  251 gtattgtcttgatcttttaactgat 275  Q
    ||||||||| |||||| | ||||||    
T  14617838 gtattgtctggatcttctcactgat 14617862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 28561533 - 28561611
Alignment:
Q  145 ccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttc 223  Q
    |||| ||||||||||| || ||||| || |||||||| ||||| ||||| |||||||| |||||||| || ||||||||    
T  28561533 ccatcctgcattcttccttcaagattaaagatcttggtcagttgaaatattttcttggattagaggtggcacattcttc 28561611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 325
Target Start/End: Original strand, 12302377 - 12302618
Alignment:
Q  84 gtgtatgttgatgatgtgatcctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggcc 183  Q
    ||||||||| ||||| ||||| | || ||  |||| || |||||||| ||| |||| |||||||| || |||||||| || ||||| || ||||||||      
T  12302377 gtgtatgttaatgatatgatcattgctggtgattccatgtctgaatttcaacatatgaaagccatcctacattcttccttcaagattaaagatcttggtt 12302476  T
Q  184 agttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatt 283  Q
    ||||||| ||||| | |  ||| || ||| | ||||| || |||||||||||  | | |||||| ||||||||  |||||||| | ||||||  | |       
T  12302477 agttaaattacttccatcattttgaagtttcacattcatctaaaggaatctccttgtatcaaaggaagtattgcattgatcttctcactgatctaggtca 12302576  T
Q  284 tttagcttccaaacctgtttctacaccatctgacccttcatg 325  Q
    | |  ||||||||||||||||||| || ||||| ||||||||    
T  12302577 tctgacttccaaacctgtttctactccttctgaaccttcatg 12302618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 259
Target Start/End: Original strand, 3004921 - 3005021
Alignment:
Q  159 tcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtc 258  Q
    ||||| || ||||| ||||||||||| |||||||| || ||||||||||||||||||||||||  | ||||||||||  | |||||||||||||||||||    
T  3004921 tctttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggaatctcattgtgtcaaagaaagtattgtc 3005020  T
Q  259 t 259  Q
    |    
T  3005021 t 3005021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 8853841 - 8853950
Alignment:
Q  141 aaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctcttt 240  Q
    |||||||||||||| || || ||||| |||||||||||||| || || || || || ||||| |||||| |||||||||||||  ||||||| |||||||    
T  8853841 aaagccattctgcactcctcctttaaaatcaaggatcttggtcaattgaagtatttccttggattagagattgctcattcttctcaaggaatatctcttt 8853940  T
Q  241 gtcaaagaaa 250  Q
    |||| |||||    
T  8853941 gtcagagaaa 8853950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 18477565 - 18477614
Alignment:
Q  168 atcaaggatcttggccagttaaaatactttcttggtttagaggttgctca 217  Q
    |||||||||||||||||||| ||||  |||||||||||||| ||||||||    
T  18477565 atcaaggatcttggccagttgaaattttttcttggtttagaagttgctca 18477614  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 19666209 - 19666273
Alignment:
Q  151 tgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgct 215  Q
    ||||||| ||||| ||||| |||||  | |||||||| ||||| |||||||||||||||||||||    
T  19666209 tgcattcctctttcaagattaaggacttgggccagttgaaatattttcttggtttagaggttgct 19666273  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 253
Target Start/End: Complemental strand, 19813392 - 19813298
Alignment:
Q  159 tcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagta 253  Q
    ||||| || ||||| |||| | |||| ||||||||||| ||||||||||| ||||||||||||  | |||| || || || || |||||||||||    
T  19813392 tctttcaaaatcaaagatcattgccaattaaaatacttccttggtttagaagttgctcattctgaacaagggatttccctatgccaaagaaagta 19813298  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 37737501 - 37737401
Alignment:
Q  159 tcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtc 258  Q
    ||||| || ||||| ||||||||||| |||||||| || ||||||||||||||||||||||||  | ||||||||||  | |||||||||||||||||||    
T  37737501 tctttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggaatctcattgtgtcaaagaaagtattgtc 37737402  T
Q  259 t 259  Q
    |    
T  37737401 t 37737401  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 265
Target Start/End: Complemental strand, 13427994 - 13427891
Alignment:
Q  162 tttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttg 261  Q
    |||||||||||||||||||||||| ||||||| ||||||||  ||||||| ||| |||||   || ||||||  | | || |||||||| ||||||||||    
T  13427994 tttaagatcaaggatcttggccagctaaaatattttcttggcatagaggtggcttattctaagaatggaatcagtatatgccaaagaaaatattgtcttg 13427895  T
Q  262 atct 265  Q
    ||||    
T  13427894 atct 13427891  T

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Target: scaffold0257 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 151 - 304
Target Start/End: Original strand, 8273 - 8426
Alignment:
Q  151 tgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaa 250  Q
    ||||||| ||||| ||||| |||||  | ||||| || ||||| ||||||||||||||||||||||| |||||  |||| || ||| ||||||| | |||    
T  8273 tgcattcctctttcaagattaaggacttgggccaattgaaatattttcttggtttagaggttgctcactcttctcaaggcatatctgtttgtcagaaaaa 8372  T
Q  251 gtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttc 304  Q
     |||||||| |||||  | |||||| || |   ||||||||||||||| |||||    
T  8373 atattgtctggatctcctcactgattcaggtcatttagcttccaaaccagtttc 8426  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 253
Target Start/End: Complemental strand, 18551336 - 18551164
Alignment:
Q  81 cttgtgtatgttgatgatgtgatcctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttg 180  Q
    ||||| ||||| |||||| | |||||||||||||||||  | ||||||||  || | || ||| ||||||| |||   ||||| || ||||| |||||||    
T  18551336 cttgtctatgtagatgatatcatcctagcaggaaattcactttctgaatttgaaaacatcaaaaccattcttcataactctttcaaaatcaaagatcttg 18551237  T
Q  181 gccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagta 253  Q
    ||||||| ||||| || ||||||||||| || |||||||||  | |||| || ||| | || |||||||||||    
T  18551236 gccagttgaaatatttccttggtttagaagtagctcattctgaacaagggatatctttatgccaaagaaagta 18551164  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 2998101 - 2998159
Alignment:
Q  204 ttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttga 262  Q
    |||||||||||||||||   | |||| |||||| ||| |||||||||||||||||||||    
T  2998101 ttagaggttgctcattccaaagaagggatctctatttctcaaagaaagtattgtcttga 2998159  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 44667217 - 44667108
Alignment:
Q  108 gcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttag 207  Q
    |||||||||||| | ||||| |||||| |||| ||| ||||||||||| |||| || |||||||| ||| | || ||||| || || ||||||||| | |    
T  44667217 gcaggaaattctctttctgagttccaacatatcaaatccattctgcatgcttcattcaagatcaaagatttgggacagttgaactattttcttggtcttg 44667118  T
Q  208 aggttgctca 217  Q
    ||||||||||    
T  44667117 aggttgctca 44667108  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 310
Target Start/End: Complemental strand, 18963443 - 18963220
Alignment:
Q  87 tatgttgatgatgtgatcctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagt 186  Q
    |||||||||||||||||  | || || ||  |||| |||||||| ||| |||| || |  || |||||||| || || || || || |||||||| ||||    
T  18963443 tatgttgatgatgtgataattgctggtaacactatgtctgaatttcaacatatcaatgatatcctgcattcgtcattcaaaattaaagatcttggtcagt 18963344  T
Q  187 taaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagattttt 286  Q
    | ||||| || ||||||||||| ||||| ||||| ||  ||||||||||| | || ||||| || |||||  |||||||| | | ||||  | |   | |    
T  18963343 tgaaatatttccttggtttagaagttgcacattcatctcaaggaatctctttgtgccaaaggaaatattgcattgatcttcttattgatttaggtcatct 18963244  T
Q  287 agcttccaaacctgtttctacacc 310  Q
    ||||||||||||||||||||||||    
T  18963243 agcttccaaacctgtttctacacc 18963220  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 4643416 - 4643364
Alignment:
Q  312 tctgacccttcatgaaaattacacactgattctagttctccttatgatgatgt 364  Q
    ||||| || ||||| ||| |||||| |||||||||| ||||||||||||||||    
T  4643416 tctgatccatcatgcaaactacacaatgattctagtgctccttatgatgatgt 4643364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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