View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18108_low_20 (Length: 348)
Name: NF18108_low_20
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 161 - 332
Target Start/End: Complemental strand, 9072602 - 9072431
Alignment:
| Q |
161 |
caaacccttccaagaagtgggactaacaaatttcacatgacaaccagcttgtaaatcttcagcagttaaataaccagctatagcataaatataatagcct |
260 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
9072602 |
caaacccttcaaagaagtgggagtaataaatttcacatgacaaccaacttgtaaatcttcagcagttatatgaccagctatagcataaatataatagcct |
9072503 |
T |
|
| Q |
261 |
ttggatttggagttccatttgttacaagaagaagtattcaaatacttaggattgtcacttacccgatggcta |
332 |
Q |
| |
|
|| |||||||| | | || ||| ||||||||||||| ||| |||||||||| || ||| |||||||| |
|
|
| T |
9072502 |
tttgatttggactcctgagtgagacaggaagaagtattcacatatttaggattgttacgtactggatggcta |
9072431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 9072706 - 9072596
Alignment:
| Q |
21 |
gacttttcacaatgatactgacagggaagattcaaccatgaaatttcaaatccataaactaacgacttgtgtatttcatcatatgatattacttgatttc |
120 |
Q |
| |
|
||||||||||||| || |||||| |||||| |||||||||||| ||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9072706 |
gacttttcacaataattctgacaaggaagacgcaaccatgaaatctcaaatccatacactaatgccttttgtatttcatcatatgatattacttgatttc |
9072607 |
T |
|
| Q |
121 |
cttgcaaaccc |
131 |
Q |
| |
|
||||||||||| |
|
|
| T |
9072606 |
cttgcaaaccc |
9072596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 153 - 311
Target Start/End: Complemental strand, 8864449 - 8864291
Alignment:
| Q |
153 |
tttcttttcaaacccttccaagaagtgggactaacaaatttcacatgacaaccagcttgtaaatcttcagcagttaaataaccagctatagcataaatat |
252 |
Q |
| |
|
||||||| |||||| ||||||||| ||| |||| |||||||||||||||||| |||| ||||||| |||| |||||| |||||| |||||||| |||| |
|
|
| T |
8864449 |
tttctttgcaaacctgaccaagaagttggagtaaccaatttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcatatatat |
8864350 |
T |
|
| Q |
253 |
aatagcctttggatttggagttccatttgttacaagaagaagtattcaaatacttagga |
311 |
Q |
| |
|
|||| |||||||||||||||||| | || ||| ||||||||||||| ||| |||||| |
|
|
| T |
8864349 |
aataccctttggatttggagttcaaattcagacatgaagaagtattcacatatttagga |
8864291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 9065201 - 9065302
Alignment:
| Q |
172 |
aagaagtgggactaacaaatttcacatgacaaccagcttgtaaatcttcagcagttaaataaccagctatagcataaatataatagcctttggatttgga |
271 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||| |||| || || ||||| ||||||| |||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
9065201 |
aagaagtgggagtaaccaatttcacatgacaaccaacttgaaagtcctcagccgttaaatcaccaactatagcataaatataattgcctttggatttgga |
9065300 |
T |
|
| Q |
272 |
gt |
273 |
Q |
| |
|
|| |
|
|
| T |
9065301 |
gt |
9065302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 315
Target Start/End: Complemental strand, 8868657 - 8868535
Alignment:
| Q |
193 |
tcacatgacaaccagcttgtaaatcttcagcagttaaataaccagctatagcataaatataatagcctttggatttggagttccatttgttacaagaaga |
292 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||| |||||| |||||| ||||||||||||||||| |||| |||||| ||| |||| ||| ||| ||||| |
|
|
| T |
8868657 |
tcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataatacccttgggatttagagctccaattgagacatgaaga |
8868558 |
T |
|
| Q |
293 |
agtattcaaatacttaggattgt |
315 |
Q |
| |
|
| |||||| ||| |||||||||| |
|
|
| T |
8868557 |
aatattcacatatttaggattgt |
8868535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 275
Target Start/End: Complemental strand, 9100103 - 9100024
Alignment:
| Q |
196 |
catgacaaccagcttgtaaatcttcagcagttaaataaccagctatagcataaatataatagcctttggatttggagttc |
275 |
Q |
| |
|
||||||||||| |||| ||||||| |||| ||| | |||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9100103 |
catgacaaccaacttgaaaatcttgagcaactaatttaccagcaatagcataaatataataccctttggatttggagttc |
9100024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 8971918 - 8972020
Alignment:
| Q |
153 |
tttcttttcaaacccttccaagaagtgggactaacaaatttcacatgacaaccagcttgtaaatcttcagcagttaaataaccagctatagcataaatat |
252 |
Q |
| |
|
||||||| ||||||| | |||| || ||| |||| |||||||||||||||||| |||| ||||||| |||| |||||| |||||| |||||||| |||| |
|
|
| T |
8971918 |
tttctttccaaacccaacaaagatgttggagtaaccaatttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcatatatat |
8972017 |
T |
|
| Q |
253 |
aat |
255 |
Q |
| |
|
||| |
|
|
| T |
8972018 |
aat |
8972020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 9006946 - 9007048
Alignment:
| Q |
153 |
tttcttttcaaacccttccaagaagtgggactaacaaatttcacatgacaaccagcttgtaaatcttcagcagttaaataaccagctatagcataaatat |
252 |
Q |
| |
|
||||||| ||||||| | |||| || ||| |||| |||||||||||||||||| |||| ||||||| |||| |||||| |||||| |||||||| |||| |
|
|
| T |
9006946 |
tttctttccaaacccaacaaagatgttggagtaaccaatttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcatatatat |
9007045 |
T |
|
| Q |
253 |
aat |
255 |
Q |
| |
|
||| |
|
|
| T |
9007046 |
aat |
9007048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 265
Target Start/End: Complemental strand, 9136832 - 9136720
Alignment:
| Q |
153 |
tttcttttcaaacccttccaagaagtgggactaacaaatttcacatgacaaccagcttgtaaatcttcagcagttaaataaccagctatagcataaatat |
252 |
Q |
| |
|
||||||| ||||||| ||||||||| || |||| ||||||||||||| ||| |||| ||||||| |||| ||||| |||||| |||||||||||| |
|
|
| T |
9136832 |
tttctttgcaaacccgaccaagaagttagagtaactgatttcacatgacagccaacttgaaaatcttgagcaactaaatcaccagccatagcataaatag |
9136733 |
T |
|
| Q |
253 |
aatagcctttgga |
265 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
9136732 |
aataccctttgga |
9136720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 9100228 - 9100138
Alignment:
| Q |
38 |
ctgacagggaagattcaaccatgaaatttcaaatccataaactaacgacttgtgtatttcatcatatgatattacttgatttccttgcaaa |
128 |
Q |
| |
|
|||||| ||||| |||| ||||||||| ||||||||||| ||||||| ||| || || ||||||||| | ||||||||||| ||||||| |
|
|
| T |
9100228 |
ctgacatggaagtttcatccatgaaatctcaaatccatatactaacgccttatgaatgatatcatatgaaagtacttgatttctttgcaaa |
9100138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 8864538 - 8864436
Alignment:
| Q |
28 |
cacaatgatactgacagggaagattcaaccatgaaatttcaaatccataaactaacgacttgtgtatttcatcatatgatattacttgatttccttgcaa |
127 |
Q |
| |
|
||||| ||| || ||| |||||||| ||||||||||| ||||||||||| || || | ||||| || ||||||| || | ||||||||||| |||||| |
|
|
| T |
8864538 |
cacaaagattcttacaaggaagattgaaccatgaaatatcaaatccatataccaatgctttgtgcatgacatcataggaaagtacttgatttctttgcaa |
8864439 |
T |
|
| Q |
128 |
acc |
130 |
Q |
| |
|
||| |
|
|
| T |
8864438 |
acc |
8864436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University