View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18108_low_21 (Length: 347)
Name: NF18108_low_21
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_low_21 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 33702114 - 33702284
Alignment:
| Q |
18 |
aatacatgtcacattactagacagccttgcacttcaaggcatgccattattcaaagtcataaggaatatagtatcagatttac-----nnnnnnnnnnnn |
112 |
Q |
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| T |
33702114 |
aatacatgtcacattactagacagccttgcacttcaaggcatgacattattcaaagtcataaggaatatagtatcagatttacaaaaaaaaaaaaaaaaa |
33702213 |
T |
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| Q |
113 |
cttatttcattagttttgagttagtcattaatgtttaacacagcaacactagtctatcaccaccaaaacct |
183 |
Q |
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| T |
33702214 |
cttaattcattagttttcagttagtcattaatgtttaacacagcaacactagtctatcaccaccaaaacct |
33702284 |
T |
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Target: scaffold0016 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 246 - 331
Target Start/End: Complemental strand, 78094 - 78009
Alignment:
| Q |
246 |
aatgaaaagaccaaattcttctattcaaccttaacaataatcacatcactgttgttcgtttcatctgtagtttccccatccttcat |
331 |
Q |
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| T |
78094 |
aatgaaaagaccatattcttctattcaaccttgacaataatcacatcattgttgttccttccctctgtagtttccccatccttcat |
78009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 27510107 - 27510157
Alignment:
| Q |
135 |
agtcattaatgtttaacacagcaacactagtctatcaccaccaaaacctaa |
185 |
Q |
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| T |
27510107 |
agtcattaatgtttaacacagcaacactagtctatcaccatcaaaacctaa |
27510157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 27510969 - 27511035
Alignment:
| Q |
140 |
ttaatgtttaacacagcaacactagtctatcaccaccaaaacc---taaattcatttgcactaaaaa |
203 |
Q |
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| T |
27510969 |
ttaatatttaacacagcaacaccagtctatcaccatcaaaacctaataaattcatttgcactaaaaa |
27511035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 328
Target Start/End: Original strand, 27511138 - 27511205
Alignment:
| Q |
261 |
ttcttctattcaaccttaacaataatcacatcactgttgttcgtttcatctgtagtttccccatcctt |
328 |
Q |
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| T |
27511138 |
ttcttctattcaaccttgacaataatcacattattgtcgttcctttcctccgtagtttccccatcctt |
27511205 |
T |
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