View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18108_low_25 (Length: 291)
Name: NF18108_low_25
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 40132148 - 40132420
Alignment:
| Q |
1 |
gaagtgaaaccaaagagaagtacnnnnnnnngtatattggactccatgaaagtgttttcactatagaattagatagatagatggagaaggaatgaaagag |
100 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40132148 |
gaagtgaaaccgaagagaagtacaaaaaaaagtatattggactccatgaaagtgttttcactatagaattagatagatggatggagaaggaatgaaagag |
40132247 |
T |
|
| Q |
101 |
aaagactatatatatttatgagatttcatgtcatatagatagattgtagattgctaaaaagcattaatgtttctatctagcactgtattgcatcatgtgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
40132248 |
aaagactatatatatttatgagatttcatgtcatatagatagattgtggattgctaaaaagcattaatgtttctatctagcactgtattgcatc-tatgt |
40132346 |
T |
|
| Q |
201 |
tatggtcgggagcatgaaagacaaattatgatattgattaaagtattaaaatatgtaaatttacatcaaaaaat |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40132347 |
tatggtcgggagcatgaaagacaaattatgatattgattaaagtattaaaatatgtaaatttacatcaaaaaat |
40132420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University