View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18108_low_29 (Length: 272)
Name: NF18108_low_29
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_low_29 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 32666738 - 32667009
Alignment:
| Q |
1 |
tcatcatacgccaataataagtcaatgcagctggaactgaaccaatcatcaatatcaacctccatgcaacgtcagcctccggcggcacatcaaaagccgt |
100 |
Q |
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| T |
32666738 |
tcatcatacgccaataataagtcaatgcagctggaactgaaccaatcatcaatatcaacctccatgcaacgtcagcctccggcggcacatcaaaagccgt |
32666837 |
T |
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| Q |
101 |
tgccggcttcgaaccgctgcgaaataccaagcaaaccaccatagtaacagttgcactagccaatataccaaacccttgcatagaaaaaaccgcagctata |
200 |
Q |
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| T |
32666838 |
tgccggcttcgaaccgctgcgaaataccaagcaaaccaccatagtaacagttgcactagccaatataccaaacccttgcatagaaaaaaccgcagctata |
32666937 |
T |
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| Q |
201 |
aaagaacctcttgtccttttatttgcaaactcagacataatggtagaagataaaggataatcaccaccaatt |
272 |
Q |
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| T |
32666938 |
aaagaacctcttgtccttttattagcaaactcagacataatggtagaagataaaggataatcaccaccaatt |
32667009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 37315765 - 37315878
Alignment:
| Q |
158 |
agccaatataccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttatttgcaaactcagacataatggtagaagataaagga |
257 |
Q |
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| T |
37315765 |
agccaaaattccaaacccttgcatagcaaaaaccgaagctataaacgcgccacgagtctttttgttggcatattcagacataatagtagctgaaagaggg |
37315864 |
T |
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| Q |
258 |
taatcaccaccaat |
271 |
Q |
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| T |
37315865 |
taatcaccaccaat |
37315878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 33109402 - 33109298
Alignment:
| Q |
168 |
ccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttatttgcaaactcagacataatggtagaagataaaggataatcaccac |
267 |
Q |
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||||| |||||||||| ||| || ||||| ||||||| |||| ||| | || || ||| ||||||||||||| |||| ||| | ||| |||||||||| |
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| T |
33109402 |
ccaaatccttgcatagcaaacactgcagcgataaaagctcctcgcgtcttcttgttcgcatactcagacataattgtagcagaaagagggtaatcaccac |
33109303 |
T |
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| Q |
268 |
caatt |
272 |
Q |
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||||| |
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| T |
33109302 |
caatt |
33109298 |
T |
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