View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18108_low_30 (Length: 269)

Name: NF18108_low_30
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18108_low_30
NF18108_low_30
[»] chr3 (3 HSPs)
chr3 (1-142)||(6079191-6079331)
chr3 (1-68)||(11028685-11028752)
chr3 (207-243)||(6079090-6079126)
[»] chr6 (2 HSPs)
chr6 (1-77)||(19215375-19215449)
chr6 (209-245)||(13549165-13549201)
[»] scaffold0017 (2 HSPs)
scaffold0017 (1-72)||(39156-39228)
scaffold0017 (103-142)||(39286-39325)
[»] chr1 (1 HSPs)
chr1 (1-50)||(19190469-19190518)
[»] chr2 (1 HSPs)
chr2 (1-72)||(13652927-13652999)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 6079331 - 6079191
Alignment:
Q  1 acacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggtatataggaagnnnnnnnnnnccaaattattttc 100  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||          |||||||||||||    
T  6079331 acacaaagtaaatatcaaataagtccagaggtacaaaacataaaaaattgtgtctttatttataggtatataggaag-aaaaaaaaaccaaattattttc 6079233  T
Q  101 tttgttcatcatctctatttacatcagactttcattttctac 142  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  6079232 tttgttcatcatctctatttacatcacactttcattttctac 6079191  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 11028685 - 11028752
Alignment:
Q  1 acacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggta 68  Q
    |||||||| ||||||||||||||||  | |||||||| |||||||||||| |||||||||||||||||    
T  11028685 acacaaagcaaatatcaaataagtcgagtggtacaaagcacaaaaaattgggtctttatttataggta 11028752  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 6079126 - 6079090
Alignment:
Q  207 tgtaaacaaacctctctctctccaaaaaccttatgcc 243  Q
    ||||||||| |||||||||||||||||||||||||||    
T  6079126 tgtaaacaaccctctctctctccaaaaaccttatgcc 6079090  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 19215375 - 19215449
Alignment:
Q  1 acacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggtatataggaag 77  Q
    ||||||||||||||||| |||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  19215375 acacaaagtaaatatcatataagtccagaggtacaaa-cacaaaa-attgtgtctttatttataggtatataggaag 19215449  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 13549165 - 13549201
Alignment:
Q  209 taaacaaacctctctctctccaaaaaccttatgcccc 245  Q
    |||||||||||||||||||||||||||||||||||||    
T  13549165 taaacaaacctctctctctccaaaaaccttatgcccc 13549201  T

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Target: scaffold0017 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 39156 - 39228
Alignment:
Q  1 acacaaagtaaatatcaaataagtccg-gaggtacaaaacacaaaaaattgtgtctttatttataggtatata 72  Q
    |||||||| ||||||| |||||||||  |||||||||||||||||||| || ||||||||||||| |||||||    
T  39156 acacaaagcaaatatctaataagtccaagaggtacaaaacacaaaaaaatgggtctttatttataagtatata 39228  T

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Target: scaffold0017; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 39286 - 39325
Alignment:
Q  103 tgttcatcatctctatttacatcagactttcattttctac 142  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  39286 tgttcatcatctctatttacatcacactttcaatttctac 39325  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 19190518 - 19190469
Alignment:
Q  1 acacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattg 50  Q
    |||||||| ||||||||||||||||| || ||||||| ||||||||||||    
T  19190518 acacaaagcaaatatcaaataagtccagatgtacaaagcacaaaaaattg 19190469  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 13652927 - 13652999
Alignment:
Q  1 acacaaagtaaatatcaaataagtccggaggtacaaaacac-aaaaaattgtgtctttatttataggtatata 72  Q
    |||||||| ||||||||||||||||   ||||||||  ||| ||||||||| |||||||||||||| ||||||    
T  13652927 acacaaagcaaatatcaaataagtcgaaaggtacaatgcacaaaaaaattgggtctttatttatagttatata 13652999  T

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