View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18108_low_31 (Length: 253)
Name: NF18108_low_31
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 1768318 - 1768526
Alignment:
| Q |
1 |
atatgaatttaacactgttttctagtatggttgacttcccattttaaaatcttaaatatcataattttagaaggaaattttttaaattagattatcgaca |
100 |
Q |
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| T |
1768318 |
atatgaatttaacactgttttctagtatgtttgacttcccattttaaaatcttaaatatcataattttagaaggaaaatttttagattagattatcgaca |
1768417 |
T |
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| Q |
101 |
ttcatataatcacacaatcgataatttgaactgtcatgttaagattagacggtttatattctaactttgtattttggactcaatttataaaagttgactc |
200 |
Q |
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| T |
1768418 |
ttcatacaatcacacaatcgatgattcgaactgtcatgttaagattagatgatttatattctaactttgtattttggactcgatttacaaaagttgactc |
1768517 |
T |
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| Q |
201 |
atagatggt |
209 |
Q |
| |
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||||||||| |
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| T |
1768518 |
atagatggt |
1768526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 195
Target Start/End: Complemental strand, 7867989 - 7867950
Alignment:
| Q |
156 |
atattctaactttgtattttggactcaatttataaaagtt |
195 |
Q |
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| T |
7867989 |
atattctaactttgtatttttgtctcaatttataaaagtt |
7867950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 54952397 - 54952341
Alignment:
| Q |
140 |
taagattagacggtttatattctaactttgtattttggactcaatttataaaagttg |
196 |
Q |
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| T |
54952397 |
taagataagacggttcatattccaactttatattttggactcaatttagtaaagttg |
54952341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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