View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18108_low_34 (Length: 236)
Name: NF18108_low_34
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 43712124 - 43712217
Alignment:
| Q |
127 |
tccgactctgatgaaatagcagtgactgcgctgccaccaaacaacggcggcactaccaccgactaactccccgtcgccgtaggaacaagaaaaa |
220 |
Q |
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| T |
43712124 |
tccgactctgatgaaatagcagtgactgcgctgccaccaaacaacggcggcactaccaccgactaactccccgccgccgtaggagcaagaaaaa |
43712217 |
T |
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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 43712015 - 43712067
Alignment:
| Q |
18 |
gaagaacagagggtcaacgagaagccatggaaataatggtctcgtatccgacg |
70 |
Q |
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| T |
43712015 |
gaagaacagagggtcaacgagaagccatggaattaatggtctcatatccgacg |
43712067 |
T |
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Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 26272737 - 26272644
Alignment:
| Q |
127 |
tccgactctgatgaaatagcagtgactgcgctgccaccaaacaacggcggcactaccaccgactaactccccgtcgccgtaggaacaagaaaaa |
220 |
Q |
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| T |
26272737 |
tccgactccgatgaaatagcagtgactgcgctgccaccaaacaacggcagcactaccaccaacgaactccccgccgccgtaggaacaagaaaaa |
26272644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 26272846 - 26272794
Alignment:
| Q |
18 |
gaagaacagagggtcaacgagaagccatggaaataatggtctcgtatccgacg |
70 |
Q |
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| T |
26272846 |
gaagaacagagggtcaatgagaagctatggaaataatggtctcgtatccgacg |
26272794 |
T |
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