View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18108_low_37 (Length: 222)
Name: NF18108_low_37
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 8194318 - 8194115
Alignment:
| Q |
1 |
gcacttccatctactgctaaggaagttatagaagttttggacattcttttgaggtggtttgtgttgcagttctgcaaatcaaacacaacatgtctattaa |
100 |
Q |
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| T |
8194318 |
gcacttccatctactgctaaggaagttatagaagttttggacattcttttgaggtggtttgtgttgcagttctgcaaatcaaacacaacatgtctattaa |
8194219 |
T |
|
| Q |
101 |
aggtacaatttagtttttccttttgtattcaccgttactttcagatttctttttctcctctcttctttggttatgaagtgtattatggccctgtttagat |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8194218 |
aggtacaatttagttttgccttttgtattcaccgttactttcagatttctttttctcctctcttctttggttatgaagtgtattatggccctgtttagat |
8194119 |
T |
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| Q |
201 |
aaac |
204 |
Q |
| |
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|||| |
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| T |
8194118 |
aaac |
8194115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 42352276 - 42352082
Alignment:
| Q |
1 |
gcacttccatctactgctaaggaagttatagaagttttggacattcttttgaggtggtttgtgttgcagttctgcaaatcaaacacaacatgtctattaa |
100 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42352276 |
gcacttccatccattgctaaggaagttatagaagttttggacattcttttgaggtggtttgtattgcagttctgcaaatcaaacacaacatgtctattaa |
42352177 |
T |
|
| Q |
101 |
aggtacaatttagtttttccttttgtattcaccgttactttcagatttctttttctcctctcttctttggttatgaagtgtattatggccctgttt |
196 |
Q |
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| T |
42352176 |
aggtacagtttagttttcccttctgttttcaccgttactttcaaatttctcctcctcctatcttctttggttatgaagggt-ttatggccatgttt |
42352082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 32058605 - 32058661
Alignment:
| Q |
20 |
aggaagttatagaagttttggacatt----cttttgaggtggtttgtgttgcagttc |
72 |
Q |
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||||| ||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
32058605 |
aggaatttatagaagctttggacattaattcttttgaggtggtttgtgttgcagttc |
32058661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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