View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18108_low_4 (Length: 736)
Name: NF18108_low_4
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 455 - 726
Target Start/End: Original strand, 42802941 - 42803212
Alignment:
| Q |
455 |
gagagggggaaattgaaagtttacatccataggttcatgaatttcagctacagagtttgaacgtggccaccagcttcaccctttctcttccactcctcag |
554 |
Q |
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| T |
42802941 |
gagagggggaaattgaaagtttacagccataggttcatgaatttcagctacagagtttgaacgaggccaccagcttcaccctttctcttccactcctcag |
42803040 |
T |
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| Q |
555 |
ccgtcgtttccatgctttcttcactccaacaacattgttcctctactcgttcatctgcatgcatagcaacccttctcaaagcttgcaagagaatccaaca |
654 |
Q |
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| T |
42803041 |
ccgtcgtttccatgctttcttcgctacaacaacattgttccgctactcgttcatctgcatgcataacaacccttctcaaagcttgcaagagaatccaaca |
42803140 |
T |
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| Q |
655 |
tcttcaacaagttcacgcttccatcattcaaagaggccttgaacaagaccaagttctcatttccaatttcat |
726 |
Q |
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| T |
42803141 |
tcttcaacaagttcacgcttccatcattcaaagaggccttgaacaagaccaagttctcatttccaatttcat |
42803212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 554 - 726
Target Start/End: Original strand, 42760638 - 42760810
Alignment:
| Q |
554 |
gccgtcgtttccatgctttcttcactccaacaacattgttcctctactcgttcatctgcatgcatagcaacccttctcaaagcttgcaagagaatccaac |
653 |
Q |
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| T |
42760638 |
gccgtcgtttccatgctttcttcactccaacaacattgttcctctactcgttcatctgcatgcatagcaacccttctcaaagcttgcaagagaatccaac |
42760737 |
T |
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| Q |
654 |
atcttcaacaagttcacgcttccatcattcaaagaggccttgaacaagaccaagttctcatttccaatttcat |
726 |
Q |
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| T |
42760738 |
atcttcaacaagttcacgcttccatcattcaaagaggccttgaacaagaccagttcctcatttccaatttcat |
42760810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 42802446 - 42802606
Alignment:
| Q |
18 |
gacgttgactaagaaaacttggttttttctctaccagtttgtgtctttcaatgtacttcgatcagttggtttgattcagacactttcgccaaatcagtac |
117 |
Q |
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| T |
42802446 |
gacgttgactaagaaaacttggttttttctctaccagtttgtgtctttcaatgtacttcgatcagttggtttgattcagacactttcgccaaatcagtac |
42802545 |
T |
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| Q |
118 |
tagtatgaaaaatgaggtaaaaaagaagaagtacatgagttggaacttcgaactaacagcc |
178 |
Q |
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| T |
42802546 |
tagtatgaaaaatgaggtaaaaaagaagaattacatgatttggaacttcgaactaacagcc |
42802606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 42758602 - 42758742
Alignment:
| Q |
18 |
gacgttgactaagaaaacttggttttttctctaccagtttgtgtctttcaatgtacttcgatcagttggtttgattcagacactttcgccaaatcagtac |
117 |
Q |
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| T |
42758602 |
gacgttgactaagaaaacttggctttttctttaccagttggtgtcttgcaatgtacttcaatcagatggtttgattcagacactttcgccaaataagtac |
42758701 |
T |
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| Q |
118 |
tagtatgaaaaatgaggtaaaaaagaagaagtacatgagtt |
158 |
Q |
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| T |
42758702 |
tagtatgaaaaataaggtaaaaatgaagaagtacatgagtt |
42758742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 42802842 - 42802884
Alignment:
| Q |
356 |
acgttaacaaacccaattttaaaatatgttccgtacggtaatc |
398 |
Q |
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| T |
42802842 |
acgttaacaaacccaattttaaaatatgttccgtacggtaatc |
42802884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 42758758 - 42758800
Alignment:
| Q |
136 |
aaaaaagaagaagtacatgagttggaacttcgaactaacagcc |
178 |
Q |
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| T |
42758758 |
aaaaatgaagaagtacatgagttggaacttcgaactaacagcc |
42758800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 42802641 - 42802679
Alignment:
| Q |
157 |
ttggaacttcgaactaacagccttattgacttgcgtaaa |
195 |
Q |
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| T |
42802641 |
ttggaacttcgaactaacagccttattgacttgcgtaaa |
42802679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 42758801 - 42758857
Alignment:
| Q |
128 |
aatgaggtaaaaaagaagaagtacatgagttggaacttcgaactaacagccttattga |
185 |
Q |
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| T |
42758801 |
aatgaggtaaaaataaagaagtacatgagttgg-acttcgaactaacagcctgattga |
42758857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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