View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18108_low_6 (Length: 692)
Name: NF18108_low_6
Description: NF18108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18108_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 17 - 676
Target Start/End: Complemental strand, 50266370 - 50265710
Alignment:
| Q |
17 |
atgaatggcagggaagaataaaaatgctgcatttcttcttcacaaacatcaggatactattaatagcaacagataattacttttaggcaaattcattggc |
116 |
Q |
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| T |
50266370 |
atgaatggcagggaagaataaaaatgctgcatttcttcttcacaaacatcaggatactattaatagcaacagataattacttttaggcaaattcattggc |
50266271 |
T |
|
| Q |
117 |
ttgacattgatggtaaaatacttgtgattagaaagcatggcatgaatttcattgggacgaagccatcttgttcttgcttcctccgtaatgctcgcaacat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50266270 |
ttgacattgatggtaaaatacttgtgattagaaagcatggcatgaatttcattgggacgaagccatcttgttcttgcttcctccgtaatgctcgcaacat |
50266171 |
T |
|
| Q |
217 |
ccaggtctgaggcatataaaataaaaagttcaaaacaagtaaacgggggtgatttaatattgatcaatgacagggtaataagtaatacatgtaagatttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50266170 |
ccaggtctgaggcatataaaataaaaagttcaaaacaagtaaacgggggtgatttaatattgatcaatgacagggtaataagtaatacatgtaagatttg |
50266071 |
T |
|
| Q |
317 |
cagtgcgaagaagaaaaagggaacaacatacttcgaacccgatattaaaaacaatggatttctactacaccattctactaccatgttgaatataaattta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50266070 |
cagtgcgaagaagaaaaagggaacaacatacttcgaacccgatattaaaaacaatggatttctactacaccattctactaccatgttgaaaataaattta |
50265971 |
T |
|
| Q |
417 |
gacagagccaattcctcatattccaatactgcaatttaattttttacccgttttctattcatatgccct-nnnnnnnttaaaattaatggaatattgcac |
515 |
Q |
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| T |
50265970 |
gacagagccacttcctcatattccaatactgaaatttaattttttacccgttttctattcatatgccctaaaaaaaattaaaattaatgcaatattgcac |
50265871 |
T |
|
| Q |
516 |
tttccatatgagttaattattggatcaagggacaaacccactaaacgttgggacattgtgtttgacaatcnnnnnnnagtatcaaccctccagttctcat |
615 |
Q |
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| T |
50265870 |
tttccatatgatttaattattggatcaagggaccaacccactaaacgttgggacattgtgtttgacaatctttttttagtatcaaccctccagttctcat |
50265771 |
T |
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| Q |
616 |
gggaagcgaactctactaatccagagttaggatgggagaggactgttccagccaagattca |
676 |
Q |
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| T |
50265770 |
gggaagcgaactctactaatccagagttaggatgggagaggactgttccagccaagattca |
50265710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 13261291 - 13261397
Alignment:
| Q |
94 |
tacttttaggcaaattcattggcttgacattgatggtaaaatacttgtgattagaaagcatggcatgaatttcattgggacgaagccatcttgttcttgc |
193 |
Q |
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||||||| |||||||||| ||||||||||| ||| |||||||| |||||||| || ||||| ||||| ||||| |||||||||||||| || |||| |
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| T |
13261291 |
tacttttgggcaaattcaatggcttgacatggatagtaaaatatttgtgattgctgagtatggcgtgaatctcattcggacgaagccatctgctttttgc |
13261390 |
T |
|
| Q |
194 |
ttcctcc |
200 |
Q |
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||||||| |
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| T |
13261391 |
ttcctcc |
13261397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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