View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18109_high_13 (Length: 277)
Name: NF18109_high_13
Description: NF18109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18109_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 10922216 - 10922466
Alignment:
| Q |
11 |
cacagattcaattggtttaacaactatagtcgattttctatgtatactacctgtataatgtaccatcaccaatgcttatcattcacaaggtacgagtata |
110 |
Q |
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| T |
10922216 |
cacagattcaattggtttaacaactatagtcgattttctatgtatactacctgtataatttaccatcaccaacgcttatcattcacaaggtacgagtata |
10922315 |
T |
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| Q |
111 |
tatacaaaatcagttgcagcaatatgattaacagcttaacaactttaaagtattgtcttagatattaggcatcaccaaattcaccaagaataaacaatta |
210 |
Q |
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| T |
10922316 |
tatacaaaatcagttgcagcaatatgattaacggcttaacaactttaaagtattgtcttagatattaggcatcaccaaattcaccaagaataaacaatta |
10922415 |
T |
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| Q |
211 |
atttacaagctgtctagcgtcgtgtgactggtttatttaatgaccatagtg |
261 |
Q |
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| T |
10922416 |
atttacaagctgtctagcgtcgtgtgactggtttatttaatgaccatagtg |
10922466 |
T |
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Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 45 - 234
Target Start/End: Original strand, 45407119 - 45407303
Alignment:
| Q |
45 |
tttctatgtatactacctgtataatgtaccatcaccaatgcttatcattcacaaggtacgagtatatatacaaaatcagttgcagcaatatgattaacag |
144 |
Q |
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| T |
45407119 |
tttctatgtatactacatgtataatgtaccagtat-agcacctatcattcacaaggtacgattata--tacaaaatcagttgcagcaatatgattaatag |
45407215 |
T |
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| Q |
145 |
cttaacaactttaaagtattgtcttagatattaggcatcaccaaattcaccaagaataaacaattaatttacaagctgtctagcgtcgtg |
234 |
Q |
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| T |
45407216 |
cttaacaactttaaagtattgtcttagatatcagccatcaccaaatacaccaataataaacaattaa--tacaagctgtctagcgtcgtg |
45407303 |
T |
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