View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18109_high_14 (Length: 270)
Name: NF18109_high_14
Description: NF18109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18109_high_14 |
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| [»] scaffold0329 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: scaffold0329 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 51 - 270
Target Start/End: Complemental strand, 9024 - 8805
Alignment:
| Q |
51 |
aattgagattgaacatgaattcaatcgaaccagaaaaacagagttcaaagtgcagaagaaaggatctagtaccaagaatcaagcagagaaacgatcaacg |
150 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9024 |
aattgagattgaacatgaattcaatcgaaccagaaaaacagagttcaaagtgcagaagaaaggatctagcaccaagaatcaagcagagaaacgatcaacg |
8925 |
T |
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| Q |
151 |
aaggtgatcggagaagaaagcacagcggagaaaaacggttagaggccgttgaggatcgtaactacctttcccccatgggagaaggcgcatgataccataa |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8924 |
aaggtgatcggagaagaaagcacagcggagaaaaacggttagaggccgttgaggatcgtaactacctttcccccatgggagaaggcgcatgataccataa |
8825 |
T |
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| Q |
251 |
tatgaaaaacagtagaatag |
270 |
Q |
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|||||||||||||||||||| |
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| T |
8824 |
tatgaaaaacagtagaatag |
8805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 51 - 270
Target Start/End: Original strand, 22179207 - 22179426
Alignment:
| Q |
51 |
aattgagattgaacatgaattcaatcgaaccagaaaaacagagttcaaagtgcagaagaaaggatctagtaccaagaatcaagcagagaaacgatcaacg |
150 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22179207 |
aattgagattgaacatgaattcaatcgaaccagaaaaacagagttcaaagtgcagaagaaaggatctagcaccaagaatcaagcagagaaacgatcaacg |
22179306 |
T |
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| Q |
151 |
aaggtgatcggagaagaaagcacagcggagaaaaacggttagaggccgttgaggatcgtaactacctttcccccatgggagaaggcgcatgataccataa |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22179307 |
aaggtgatcggagaagaaagcacagcggagaaaaacggttagaggccgttgaggatcgtaactacctttcccccatgggagaaggcgcatgataccataa |
22179406 |
T |
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| Q |
251 |
tatgaaaaacagtagaatag |
270 |
Q |
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|||||||||||||||||||| |
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| T |
22179407 |
tatgaaaaacagtagaatag |
22179426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 51 - 270
Target Start/End: Complemental strand, 52775698 - 52775480
Alignment:
| Q |
51 |
aattgagattgaacatgaattcaatcgaaccagaaaaacagagttcaaagtgcagaagaaaggatctagtaccaagaatcaagcagagaaacgatcaacg |
150 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52775698 |
aattgagattgaacatgaattcaatcgaaccagaaaaacagagttcaaagtgcagaagaaaggatctagcaccaagaatcaagcagagaaacgatcaacg |
52775599 |
T |
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| Q |
151 |
aaggtgatcggagaagaaagcacagcggagaaaaacggttagaggccgttgaggatcgtaactacctttcccccatgggagaaggcgcatgataccataa |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
52775598 |
aaggtgatcggagaagaaagcacagcggagaaaaacggttagaggccgttgaggatcgtaactacctttcccccatgggagaaggctc-tgataccataa |
52775500 |
T |
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| Q |
251 |
tatgaaaaacagtagaatag |
270 |
Q |
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|||||||||||||||||||| |
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| T |
52775499 |
tatgaaaaacagtagaatag |
52775480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 928568 - 928488
Alignment:
| Q |
178 |
gagaaaaacggttagaggccgttgaggatcgtaactacctttcccccat-gggagaaggcgcatgataccataatatgaaa |
257 |
Q |
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|||||||||||||| || ||||| ||||| |||| ||||||||| || |||||||||||| |||||||||| ||||||| |
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| T |
928568 |
gagaaaaacggttacagaccgttatggatcataacaacctttcccttattgggagaaggcgcgtgataccatattatgaaa |
928488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 51 - 270
Target Start/End: Complemental strand, 12283617 - 12283399
Alignment:
| Q |
51 |
aattgagattgaacatgaattcaatcgaaccagaaaaacagagttcaaagtgcagaagaaaggatctagtaccaagaatcaagcagagaaacgatcaacg |
150 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12283617 |
aattgagattgaacatgaattcaatcgaaccagaaaaacagagttcaaagtgcagaagaaaggatctagcaccaagaatcaagcagagaaacgatcaacg |
12283518 |
T |
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| Q |
151 |
aaggtgatcggagaagaaagcacagcggagaaaaacggttagaggccgttgaggatcgtaactacctttcccccatgggagaaggcgcatgataccataa |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
12283517 |
aaggtgatcggagaagaaagcacagcggagaaaaacggttagaggccgttgatgatcgtaactacctttcccccatgggagaaggctc-tgataccataa |
12283419 |
T |
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| Q |
251 |
tatgaaaaacagtagaatag |
270 |
Q |
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|||||||||||||||||||| |
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| T |
12283418 |
tatgaaaaacagtagaatag |
12283399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 51 - 270
Target Start/End: Original strand, 19588917 - 19589136
Alignment:
| Q |
51 |
aattgagattgaacatgaattcaatcgaaccagaaaaacagagttcaaagtgcagaagaaaggatctagtaccaagaatcaagcagagaaacgatcaacg |
150 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
19588917 |
aattgagattgaatatgaattcaatcgaaccagaaaaacagagttcaaaatgcagaagaaaggatctagcaccatgaatcaagcagagaaacgatcaacg |
19589016 |
T |
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| Q |
151 |
aaggtgatcggagaagaaagcacagcggagaaaaacggttagaggccgttgaggatcgtaactacctttcccccatgggagaaggcgcatgataccataa |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19589017 |
aaggtgatcggagaagaaagcacagcggagaaaaacggttagaggccgttgaggatcgtaactacctttcccccatgggagaaggcgcatgataccatat |
19589116 |
T |
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| Q |
251 |
tatgaaaaacagtagaatag |
270 |
Q |
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||||||| |||||||||||| |
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| T |
19589117 |
tatgaaatacagtagaatag |
19589136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 116 - 249
Target Start/End: Complemental strand, 29497550 - 29497418
Alignment:
| Q |
116 |
ctagtaccaagaatcaagcagagaaacgatcaacgaaggtgatcggagaagaaagcacagcggagaaaaacggttagaggccgttgaggatcgtaactac |
215 |
Q |
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|||| |||| ||||||| || |||||||||||| |||| |||||||| |||||||||| ||||||||| ||||||||| |||||||||||||||||| |
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| T |
29497550 |
ctagcaccatgaatcaaacaaagaaacgatcaatgaagatgatcggaagagaaagcacaacggagaaaagtggttagaggttgttgaggatcgtaactac |
29497451 |
T |
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| Q |
216 |
ctttcccccatgggagaaggcgcatgataccata |
249 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
29497450 |
cttt-ccccatgggagaaggcgcatgataccata |
29497418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 30498434 - 30498323
Alignment:
| Q |
139 |
aaacgatcaacgaaggtgatcggagaagaaagcacagcgga-gaaaaacggttagaggccgttgaggatcgtaactacctttcccccatgggagaaggcg |
237 |
Q |
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|||||||||| | || ||||| ||||||||| || | |||| ||||||||||| || ||||| |||||| ||| |||||||| | |||||||||||| |
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| T |
30498434 |
aaacgatcaaaggagatgatcagagaagaaaacaaaacggaagaaaaacggttcgaaaccgttatggatcgaaacaacctttcctgcgtgggagaaggcg |
30498335 |
T |
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| Q |
238 |
catgataccata |
249 |
Q |
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| |||||||||| |
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| T |
30498334 |
cgtgataccata |
30498323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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