View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18109_high_20 (Length: 236)
Name: NF18109_high_20
Description: NF18109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18109_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 1116383 - 1116171
Alignment:
| Q |
3 |
taactattgtatgcttaaagaaacttgtcttacctctagaacataaatctatcgaatcatattttatagaaaagctttagggtgccacatacacttggtt |
102 |
Q |
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| T |
1116383 |
taactattgtatgcttaaagaaacttgtcttacctctagaacataaatctatcgaatcatattt-atagaaaagctttagggtgccacatacacttggtt |
1116285 |
T |
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| Q |
103 |
acaatataattatgaattgatccaaaactcttttaaacctacttaattttattttatattcatatttaagctttagggtgccaaatacataattatatat |
202 |
Q |
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| T |
1116284 |
acaatataattatgaattgatccaaaactcttttaaacctactgaattttattttatattcatatttaaactttagggtgccaa------aattatatat |
1116191 |
T |
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| Q |
203 |
aaggttataattgcaccaac |
222 |
Q |
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|||||| ||||||||||||| |
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| T |
1116190 |
aaggttgtaattgcaccaac |
1116171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 1068719 - 1068834
Alignment:
| Q |
105 |
aatataattatgaattgatccaaaactcttttaaacctacttaattttattttatattcatatttaagctttagggtgccaaatacataattatatataa |
204 |
Q |
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| T |
1068719 |
aatataattttgaaccgatccaaaactcttttaaatctactgaattttattttatattcatatttaagctttacggtgccacatacataattatagttaa |
1068818 |
T |
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| Q |
205 |
ggttataattgcacca |
220 |
Q |
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| T |
1068819 |
ggttataattgtacca |
1068834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 7951595 - 7951711
Alignment:
| Q |
105 |
aatataattatgaattgatccaaaactcttttaaacctacttaattttattttatattcatatttaagctttagggtgccaaatacataattatatataa |
204 |
Q |
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| T |
7951595 |
aatataattttgaaccgatccaaatctcttttaaacctactgaattatattttatattcatatttaagctttagggtgccatatgcataattactgacaa |
7951694 |
T |
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| Q |
205 |
ggttataattgcaccaa |
221 |
Q |
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|||| |||||||||||| |
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| T |
7951695 |
ggttgtaattgcaccaa |
7951711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 1114631 - 1114699
Alignment:
| Q |
147 |
aattttattttatattcatatttaagctttagggtgccaaatacataattatatataaggttataattg |
215 |
Q |
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| T |
1114631 |
aattttattttatatttatatttaagctttagggtgccacatacataattatagataaggttgtaattg |
1114699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 27845683 - 27845626
Alignment:
| Q |
164 |
atatttaagctttagggtgccaaatacataattatatataaggttataattgcaccaa |
221 |
Q |
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| T |
27845683 |
atatttgagctttagcgtgccacatacataattatagataaggttgtaagtgcaccaa |
27845626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 53692092 - 53692136
Alignment:
| Q |
19 |
aaagaaacttgtcttacctctagaacataaatctatcgaatcata |
63 |
Q |
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| T |
53692092 |
aaagaaacttgtctcacctctggaacagaaagctatcgaatcata |
53692136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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