View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18109_high_22 (Length: 217)
Name: NF18109_high_22
Description: NF18109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18109_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 9353941 - 9353757
Alignment:
| Q |
16 |
aatatcacattgttttggaacataagagtcacccaataatgttgctatggttcattcccacatttgatactctctccttccatacaagaaaatcttgaac |
115 |
Q |
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| T |
9353941 |
aatatcacattgttttggaacataagagtcacccaataatgttgctatggttcattcccacatttgatactctctccttccatacaagaaaatcttgaac |
9353842 |
T |
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| Q |
116 |
gctctcccaccaaacatgatcttcaaagttcttcctcaaatcaacattaaccttgaacagaatcttcagcctgcaacataaaagt |
200 |
Q |
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| T |
9353841 |
gctctcccaccaaacatgatcttcaaagttcttcctcaaatcaacattaaccttgaacagaatcttcagcctgcaacataaaagt |
9353757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 8295384 - 8295328
Alignment:
| Q |
107 |
atcttgaacgctctcccaccaaacatgatcttcaaagttcttcctcaaatcaacatt |
163 |
Q |
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| T |
8295384 |
atcttgaacactcttccaccaaacatgaacttcattgttcttccccaagtcaacatt |
8295328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 10265735 - 10265683
Alignment:
| Q |
107 |
atcttgaacgctctcccaccaaacatgatcttcaaagttcttcctcaaatcaa |
159 |
Q |
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| T |
10265735 |
atcttgaagactctcccaccaaacatgaacttcattgttcttccacaaatcaa |
10265683 |
T |
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