View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18109_high_5 (Length: 425)

Name: NF18109_high_5
Description: NF18109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18109_high_5
NF18109_high_5
[»] chr8 (3 HSPs)
chr8 (60-246)||(1183160-1183342)
chr8 (247-407)||(1182746-1182906)
chr8 (7-58)||(1183580-1183631)
[»] chr4 (2 HSPs)
chr4 (247-407)||(26076192-26076352)
chr4 (187-239)||(5706782-5706834)
[»] chr2 (1 HSPs)
chr2 (247-407)||(12370607-12370767)
[»] chr1 (1 HSPs)
chr1 (262-407)||(4958602-4958747)
[»] chr7 (2 HSPs)
chr7 (247-407)||(5243002-5243161)
chr7 (60-145)||(5243516-5243601)
[»] chr3 (3 HSPs)
chr3 (247-407)||(32368621-32368781)
chr3 (187-239)||(18641439-18641491)
chr3 (85-130)||(32368156-32368201)
[»] chr6 (1 HSPs)
chr6 (267-334)||(9636620-9636687)
[»] chr5 (1 HSPs)
chr5 (238-299)||(33717078-33717140)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 60 - 246
Target Start/End: Complemental strand, 1183342 - 1183160
Alignment:
Q  60 tgtcacttgttccatgatgaaatataacctagtttcaacgtgtttacttcttccatgtgctataggattcttagctagattaatagcttatttgtttgtt 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||    
T  1183342 tgtcacttgttccatgatgaaatataacctagtttcaacgtgtttacttcttccatgtgctataggattcttagctagattaatagcttatt----tgtt 1183247  T
Q  160 attaaatttcagcttcaaaggattttccacttcacagtttagctctttcatcactgtatccagccaaattgcttgacaagctgcaaa 246  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1183246 attaaatttcagcttcaaaggattttctacttcacagtttagctctttcatcactgtatccagccaaattgcttgacaagctgcaaa 1183160  T

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Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 247 - 407
Target Start/End: Complemental strand, 1182906 - 1182746
Alignment:
Q  247 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 346  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1182906 agatgagatttcctaggatcattcatgtatctactgatgatacttaccgcaaagcatatatcaggtctgttattgcataggcatctcagagatccaacta 1182807  T
Q  347 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1182806 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatt 1182746  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 1183631 - 1183580
Alignment:
Q  7 gagagagaagaaagtgttagaagtttgttatggttttcattaattaatgaaa 58  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1183631 gagagagaagaaagtgtttgaagtttgttatggttttcattaattaatgaaa 1183580  T

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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 247 - 407
Target Start/End: Complemental strand, 26076352 - 26076192
Alignment:
Q  247 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 346  Q
    |||||||| || || |||||||||||| |||||||| | |||||||| |||||||||||||| |||||||| ||||||| |||||| || ||||| ||||    
T  26076352 agatgagacttccttggatcattcatgaatctactgattatacttactgcaaagcatatatctggtctgttgttgcataagtatcttagtgatcccacta 26076253  T
Q  347 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatt 407  Q
    || |||||||||  ||||  ||  | || |||||||| ||||||||||| || ||||||||    
T  26076252 tctgtttgaattcagtagactccgccttttcttcattactacattcatctagtttagcatt 26076192  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 5706834 - 5706782
Alignment:
Q  187 cacttcacagtttagctctttcatcactgtatccagccaaattgcttgacaag 239  Q
    ||||||||| || |||||||||||||||| ||||||||| | |||||||||||    
T  5706834 cacttcacacttgagctctttcatcactgaatccagccataatgcttgacaag 5706782  T

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Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 247 - 407
Target Start/End: Complemental strand, 12370767 - 12370607
Alignment:
Q  247 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 346  Q
    |||||||| || || |||||||||||| |||||||| |||||||||| |||||||||||||| |||||| | ||||||| ||||||||| ||||| ||||    
T  12370767 agatgagacttccttggatcattcatgcatctactgatgatacttactgcaaagcatatatctggtctgctgttgcataagtatctcagtgatcccacta 12370668  T
Q  347 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatt 407  Q
    |  |||||||||  ||||  || || || |||||||| || |||||||| || ||||||||    
T  12370667 tatgtttgaattcagtagactccaccttttcttcattactgcattcatctagtttagcatt 12370607  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 262 - 407
Target Start/End: Original strand, 4958602 - 4958747
Alignment:
Q  262 ggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatg 361  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||  |||||||| ||||||| ||||||||  ||||| |||||| |||||||||  |    
T  4958602 ggatcattcatgaatctactgatgatacttactgcaaagcatatatatggtctgttgttgcataagtatctcaatgatcccactatctgtttgaatttag 4958701  T
Q  362 tagcttctactttctcttcattgctacattcatccagcttagcatt 407  Q
    |||  || || || |||||||| || |||||||| || ||||||||    
T  4958702 tagactccaccttttcttcattactgcattcatctagtttagcatt 4958747  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 247 - 407
Target Start/End: Complemental strand, 5243161 - 5243002
Alignment:
Q  247 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 346  Q
    |||||||| || || |||||||||||| |||| ||  |||||||||| |||||||||||||| |||||  |||| |||| ||||||||  | ||| | ||    
T  5243161 agatgagacttccttggatcattcatgaatcttctaatgatacttactgcaaagcatatatctggtctactattacataagtatctca-tggtcctatta 5243063  T
Q  347 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatt 407  Q
    || |  ||||||  |||| ||||||||||||||||||| | |||||||| |||||||||||    
T  5243062 tctgcatgaattcagtaggttctactttctcttcattgatgcattcatctagcttagcatt 5243002  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 5243601 - 5243516
Alignment:
Q  60 tgtcacttgttccatgatgaaatataacctagtttcaacgtgtttacttcttccatgtgctataggattcttagctagattaatag 145  Q
    ||||||||||||| | |||||||  ||||||||||||| |||||| || || ||||||| |||  |||| ||||||| ||| ||||    
T  5243601 tgtcacttgttcccttatgaaatgaaacctagtttcaatgtgttttctcctaccatgtgttattagattgttagctaaatttatag 5243516  T

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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 247 - 407
Target Start/End: Original strand, 32368621 - 32368781
Alignment:
Q  247 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 346  Q
    ||||||||||| || |||||||||||| | |||| | |||||||||| |||||| ||||||| ||| |||| ||||||| |||  |||  ||||| ||||    
T  32368621 agatgagatttccttggatcattcatgaacctaccgatgatacttactgcaaaggatatatctggtttgttgttgcataagtacatcaatgatcccacta 32368720  T
Q  347 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatt 407  Q
    || |||||||||  |||| || |||| | ||||||||  |||| ||||||| |||||||||    
T  32368721 tctgtttgaattcagtaggttttactctttcttcattagtacactcatccaacttagcatt 32368781  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 18641439 - 18641491
Alignment:
Q  187 cacttcacagtttagctctttcatcactgtatccagccaaattgcttgacaag 239  Q
    ||||||||| || |||||||||||||||| ||||||||| | |||||||||||    
T  18641439 cacttcacacttgagctctttcatcactgaatccagccataatgcttgacaag 18641491  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 32368156 - 32368201
Alignment:
Q  85 aacctagtttcaacgtgtttacttcttccatgtgctataggattct 130  Q
    ||||||||||||| ||||||||| || ||||||||||| |||||||    
T  32368156 aacctagtttcaatgtgtttactcctgccatgtgctattggattct 32368201  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 9636687 - 9636620
Alignment:
Q  267 attcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctca 334  Q
    |||||||||||||||| |||  ||||   |||||||||| ||||||||| ||||||||| ||||||||    
T  9636687 attcatgtatctactggtgaagcttatttcaaagcatatgtcaggtctggtattgcataagtatctca 9636620  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 33717078 - 33717140
Alignment:
Q  238 agctgcaa-aagatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaa 299  Q
    |||||||| ||||| ||||||||  |||||||||||||||||| || |||||||||| |||||    
T  33717078 agctgcaataagattagattttcacggatcattcatgtatctattgatgatacttactgcaaa 33717140  T

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