View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18109_high_8 (Length: 371)
Name: NF18109_high_8
Description: NF18109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18109_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 50274544 - 50274198
Alignment:
| Q |
18 |
aaaattgtacctggtctttgattttccttgcatgaaacttgaggaatgaacactccagtacctttaccattcctccacaaattcgttagccaaataggcg |
117 |
Q |
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| T |
50274544 |
aaaattgtacctggtctttgattttccttgcatgaaacttgaggaatgaacactccagtacctttaccattcctccacaaattcgttagccaaataggcg |
50274445 |
T |
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| Q |
118 |
gcgaacgagagctatctgtttcccacaaatagaattttcttgtaggttttgttgcattgttataattgtaaattgacctgtttgaaccatcatttgtaac |
217 |
Q |
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| T |
50274444 |
gcgaaccagagctatctgtttcccacaaatagaattttcttgtaggttttgttgcattgttataattgtaaattgacctgtttgaaccatcatttgtaac |
50274345 |
T |
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| Q |
218 |
atcaatgtgtttgaaactattggtttcaactaaatcttcattgtcttcttcagatgtcaatagcagaatctgcctcttaatctcatcatagaaagtatca |
317 |
Q |
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| T |
50274344 |
atcaatttgtctgaaactattggtttcaactaaatcttcattgtcttcttcagatgtcaatagcagaatctgcctcttaatctcatcatagaaagtatca |
50274245 |
T |
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| Q |
318 |
tcttcgttttctgtctcaaaccaaacactagcatctgaattcatctc |
364 |
Q |
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| T |
50274244 |
tcttcgttttctgtctcaaaccaaacactagaatctgaattcatctc |
50274198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 50278568 - 50278436
Alignment:
| Q |
18 |
aaaattgtacctggtctttgattttccttgcatgaaacttgaggaatgaacactccagtacctttaccattcctccacaaattcgttagccaaataggcg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50278568 |
aaaattgtacctggtctttgattttccttgcatgaaacttgaggaatgaacactccagtacctttaccattcctccacaaattcgttagccaaataggcg |
50278469 |
T |
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| Q |
118 |
gcgaacgagagctatctgtttcccacaaataga |
150 |
Q |
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| T |
50278468 |
gcgaaccagagctatctgtttcccacaaataga |
50278436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 56 - 364
Target Start/End: Original strand, 14462682 - 14462987
Alignment:
| Q |
56 |
ttgaggaatgaacactccagtacctttaccattcctccacaaattcgttagccaaataggcggcgaacgagagctatctgtttcccacaaatagaatttt |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14462682 |
ttgaggaatgaacactccagtacctttaccattcctccacaaattcgttagccaaataggcggcgaaccagagctatctgtttcccacaaatagaatttt |
14462781 |
T |
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| Q |
156 |
cttgtaggttttgttgcattgttataattgtaaattgacctgtttgaaccatcatttgtaacatcaatgtgtttgaaactattggtttcaactaaatctt |
255 |
Q |
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| T |
14462782 |
cttgtagcttttgttgcattgttataattgtaaattgacctgtttgaaccatcatttgtaacatcaatgtgtttgaaactattggtttcaactaaatctt |
14462881 |
T |
|
| Q |
256 |
cattgtcttcttcagatgtcaatagcagaatctgcctcttaatctcatcatagaaagtatcatcttcgttttctgtctcaaaccaaacactagcatctga |
355 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
14462882 |
cattg---tcttcagatgtcaatagcagaatctacctcttaatctcatcatagaaagtatcatcttcgttttctgtctcaaatcaaacactagaatctga |
14462978 |
T |
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| Q |
356 |
attcatctc |
364 |
Q |
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||||||||| |
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| T |
14462979 |
attcatctc |
14462987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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