View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18109_low_13 (Length: 307)
Name: NF18109_low_13
Description: NF18109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18109_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 30409464 - 30409176
Alignment:
| Q |
1 |
atgcttgctcaaggtcaacaactgttagatttttcattcccacaaggtttttcaagtgaatatttagctagaaatagtggagtccatttctacaatgatg |
100 |
Q |
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| T |
30409464 |
atgcttgttcaaggtcaacaactgttagatttttcattcccacaaggtttttcaagtgaatatttagctagaaatagtggagtccatttctacaatgatg |
30409365 |
T |
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| Q |
101 |
tgaaaatggtagatgacgtgattgtcaataccaataatgttgacatacccatatctcgttccgaagaagctagcgatgaaagcactctgcctgaaaattc |
200 |
Q |
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| T |
30409364 |
tgaaaatggtagatgacgtgattgtcaataccaataatgttgacatacccatatctcgttccgaagaagctagcgatgaaagcactctgcctgaaaattc |
30409265 |
T |
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| Q |
201 |
tatccacagcgaggatatcggacaacatcatgtcttagaagcagaacagaaagagatgtctcatgcagcaggagcaaagacctcagagg |
289 |
Q |
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| T |
30409264 |
tatccacagcgaggatatcggacaacatcatgtcttagaagcagaacagaaagagatgtctcatgcagcaggagcaaagacctcagagg |
30409176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 168 - 283
Target Start/End: Complemental strand, 30395636 - 30395521
Alignment:
| Q |
168 |
agctagcgatgaaagcactctgcctgaaaattctatccacagcgaggatatcggacaacatcatgtcttagaagcagaacagaaagagatgtctcatgca |
267 |
Q |
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| T |
30395636 |
agctagcgatgaaagcattctgcttgaaaattcaatccacagcaaggatatcggacaacatcatgtcctagaagcagaacagaaagagatatctcatgca |
30395537 |
T |
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| Q |
268 |
gcaggagcaaagacct |
283 |
Q |
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| T |
30395536 |
gcaggagcaaagacct |
30395521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 30395701 - 30395631
Alignment:
| Q |
1 |
atgcttgctcaaggtcaacaactgttagatttttcattcccacaaggtttttcaagtgaatatttagctag |
71 |
Q |
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||||||| ||||| ||| |||||||||||||||||||||||| ||| |||| ||| ||| ||||||||||| |
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| T |
30395701 |
atgcttgttcaagatcagcaactgttagatttttcattcccagaagattttccaaatgactatttagctag |
30395631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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