View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18109_low_14 (Length: 297)
Name: NF18109_low_14
Description: NF18109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18109_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 1605988 - 1606169
Alignment:
| Q |
18 |
tagagaatgaaagtggagaagaaagcatctaatacctcaaaataatttcttcnnnnnnnnnnnntgaggacatattccactagttttataattaattatc |
117 |
Q |
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| T |
1605988 |
tagagaatgaaagtggagaagaaagcatctaatacctcaaaataatttcttcaaaaacaaaaaatgaggacatattccactagttttataattaattatc |
1606087 |
T |
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| Q |
118 |
taattgcaaatgattatagttttatgggtaccgtacatgttttctaggaatgttattttttagtaaataatgatttcttttt |
199 |
Q |
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| T |
1606088 |
taattgcaaatgattatagttttatgggtaccgtacatgttttctaggaatgttattttttagtaaataatgatttcttttt |
1606169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 183 - 297
Target Start/End: Original strand, 1606192 - 1606306
Alignment:
| Q |
183 |
aataatgatttctttttaacaagctaagaatgtttaattagtagtatatgcgtacgtaacttatttgatgacccctaccnnnnnnnnnntgcgattcgaa |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
1606192 |
aataatgatttctttttaacaagctaagaatgtttaattagtagtatatgcgtacgtaacttatttgatgacctctaccaaaaaaaaaatgcgattcgaa |
1606291 |
T |
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| Q |
283 |
atttggtatgaaagc |
297 |
Q |
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| T |
1606292 |
atttggtatgaaagc |
1606306 |
T |
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