View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18109_low_19 (Length: 252)

Name: NF18109_low_19
Description: NF18109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18109_low_19
NF18109_low_19
[»] scaffold0329 (3 HSPs)
scaffold0329 (13-206)||(8633-8826)
scaffold0329 (13-205)||(18018-18210)
scaffold0329 (72-206)||(13527-13661)
[»] chr4 (1 HSPs)
chr4 (13-205)||(22179405-22179597)
[»] chr3 (4 HSPs)
chr3 (13-205)||(12283228-12283420)
chr3 (13-206)||(12298918-12299111)
chr3 (15-206)||(19584282-19584473)
chr3 (15-207)||(19589117-19589309)
[»] chr1 (4 HSPs)
chr1 (13-206)||(52780198-52780391)
chr1 (13-205)||(52775309-52775501)
chr1 (206-237)||(36698872-36698903)
chr1 (206-237)||(36714976-36715007)


Alignment Details
Target: scaffold0329 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 8826 - 8633
Alignment:
Q  13 aatatgaaaaacagtagaatagtaaaactgaattctcattattggaattattgttacagaaggtatatatacaaatattgaagtaacaggataaggtaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8826 aatatgaaaaacagtagaatagtaaaactgaattctcattactggaattattgttacagaaggtatatatacaaatattgaagtaacaggataaggtaat 8727  T
Q  113 gtaagtgtattctagagaataactaactacttcaagttacagctaagctagaatactatgtaatatctggtgtgtactcttcattatgcaatag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8726 gtaagtgtattctagagaataactaactacttcaagttacagctaagctagaatactatgtaatatctgctgtgtactcttcattatgcaatag 8633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 18210 - 18018
Alignment:
Q  13 aatatgaaaaacagtagaatagtaaaactgaattctcattattggaattattgttacagaaggtatatatacaaatattgaagtaacaggataaggtaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18210 aatatgaaaaacagtagaatagtaaaactgaattctcattactggaattattgttacagaaggtatatatacaaatattgaagtaacaggataaggtaat 18111  T
Q  113 gtaagtgtattctagagaataactaactacttcaagttacagctaagctagaatactatgtaatatctggtgtgtactcttcattatgcaata 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18110 gtaagtgtattctagagaataactaactacttcaagttacagctaagctagaatactatgtaatatctgctgtgtactcttcattatgcaata 18018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 72 - 206
Target Start/End: Complemental strand, 13661 - 13527
Alignment:
Q  72 aaggtatatatacaaatattgaagtaacaggataaggtaatgtaagtgtattctagagaataactaactacttcaagttacagctaagctagaatactat 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13661 aaggtatatatacaaatattgaagtaacaggataaggtaatgtaagtgtattctagagaataactaactacttcaagttacagctaagctagaatactat 13562  T
Q  172 gtaatatctggtgtgtactcttcattatgcaatag 206  Q
    |||||||||| ||||||||||||||||||||||||    
T  13561 gtaatatctgctgtgtactcttcattatgcaatag 13527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 22179405 - 22179597
Alignment:
Q  13 aatatgaaaaacagtagaatagtaaaactgaattctcattattggaattattgttacagaaggtatatatacaaatattgaagtaacaggataaggtaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22179405 aatatgaaaaacagtagaatagtaaaactgaattctcattactggaattattgttacagaaggtatatatacaaatattgaagtaacaggataaggtaat 22179504  T
Q  113 gtaagtgtattctagagaataactaactacttcaagttacagctaagctagaatactatgtaatatctggtgtgtactcttcattatgcaata 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22179505 gtaagtgtattctagagaataactaactacttcaagttacagctaagctagaatactatgtaatatctgctgtgtactcttcattatgcaata 22179597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 12283420 - 12283228
Alignment:
Q  13 aatatgaaaaacagtagaatagtaaaactgaattctcattattggaattattgttacagaaggtatatatacaaatattgaagtaacaggataaggtaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12283420 aatatgaaaaacagtagaatagtaaaactgaattctcattactagaattattgttacagaaggtatatatacaaatattgaagtaacaggataaggtaat 12283321  T
Q  113 gtaagtgtattctagagaataactaactacttcaagttacagctaagctagaatactatgtaatatctggtgtgtactcttcattatgcaata 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12283320 gtaagtgtattctagagaataactaactacttcaagttacagctaagctagaatactatgtaatatctgctgtgtactcttcattatgcaata 12283228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 12299111 - 12298918
Alignment:
Q  13 aatatgaaaaacagtagaatagtaaaactgaattctcattattggaattattgttacagaaggtatatatacaaatattgaagtaacaggataaggtaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12299111 aatatgaaaaacagtagaatagtaaaactgaattctcattactagaattattgttacagaaggtatatatacaaatattgaagtaacaggataaggtaat 12299012  T
Q  113 gtaagtgtattctagagaataactaactacttcaagttacagctaagctagaatactatgtaatatctggtgtgtactcttcattatgcaatag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12299011 gtaagtgtattctagagaataactaactacttcaagttacagctatgctagaatactatgtaatatctgttgtgtactcttcattatgcaatag 12298918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 19584282 - 19584473
Alignment:
Q  15 tatgaaaaacagtagaatagtaaaactgaattctcattattggaattattgttacagaaggtatatatacaaatattgaagtaacaggataaggtaatgt 114  Q
    ||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19584282 tatgaaatacagtagaatagtaaaactgaattctcattactagaattattgttacagaaggtatatatacatatattgaagtaacaggataaggtaatgt 19584381  T
Q  115 aagtgtattctagagaataactaactacttcaagttacagctaagctagaatactatgtaatatctggtgtgtactcttcattatgcaatag 206  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19584382 aagtgtattctagagaataactaactacttcaggttacagctaagctagaatactatgtaatatctgctgtgtactcttcattatgcaatag 19584473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 19589117 - 19589309
Alignment:
Q  15 tatgaaaaacagtagaatagtaaaactgaattctcattattggaattattgttacagaaggtatatatacaaatattgaagtaacaggataaggtaatgt 114  Q
    ||||||| ||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  19589117 tatgaaatacagtagaatagtaaaactgaattctcattactagaattattgttatagaaggtatatatacatatattgaagtaacaggataaggtaatgt 19589216  T
Q  115 aagtgtattctagagaataactaactacttcaagttacagctaagctagaatactatgtaatatctggtgtgtactcttcattatgcaatagt 207  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19589217 aagtgtattctagagaataactaactacttcaggttacagctaagctagaatactatgtaatatctgctgtgtactcttcattatgcaatagt 19589309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 52780391 - 52780198
Alignment:
Q  13 aatatgaaaaacagtagaatagtaaaactgaattctcattattggaattattgttacagaaggtatatatacaaatattgaagtaacaggataaggtaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  52780391 aatatgaaaaacagtagaatagtaaaactgaattctcattactggaattattgttacataaggtatatatacaaatattgaagtaacaggataaggtaat 52780292  T
Q  113 gtaagtgtattctagagaataactaactacttcaagttacagctaagctagaatactatgtaatatctggtgtgtactcttcattatgcaatag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  52780291 gtaagtgtattctagagaataactaactacttcaagttacagctaagctagagtactatgtaatatctgctgtgtactcttcattatgcaatag 52780198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 52775501 - 52775309
Alignment:
Q  13 aatatgaaaaacagtagaatagtaaaactgaattctcattattggaattattgttacagaaggtatatatacaaatattgaagtaacaggataaggtaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  52775501 aatatgaaaaacagtagaatagtaaaactgaattctcattactggaattattgttacataaggtatatatacaaatattgaagtaacaggataaggtaat 52775402  T
Q  113 gtaagtgtattctagagaataactaactacttcaagttacagctaagctagaatactatgtaatatctggtgtgtactcttcattatgcaata 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  52775401 gtaagtgtattctagagaataactaactacttcaagttacagctaagctagagtactatgtaatatctgctgtgtactcttcattatgcaata 52775309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 237
Target Start/End: Original strand, 36698872 - 36698903
Alignment:
Q  206 gtgtacactaaacattttgctatgatataatt 237  Q
    ||||||||||||||||||||||||||||||||    
T  36698872 gtgtacactaaacattttgctatgatataatt 36698903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 237
Target Start/End: Original strand, 36714976 - 36715007
Alignment:
Q  206 gtgtacactaaacattttgctatgatataatt 237  Q
    ||||||||||||||||||||||||||||||||    
T  36714976 gtgtacactaaacattttgctatgatataatt 36715007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University